Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBFD1O14562 AL161729.1-201ENST00000604104 1402 ntBASIC22.28■■□□□ 1.16
UBFD1O14562 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.28■■□□□ 1.16
UBFD1O14562 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBFD1O14562 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBFD1O14562 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC22.27■■□□□ 1.16
UBFD1O14562 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBFD1O14562 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBFD1O14562 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBFD1O14562 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC22.27■■□□□ 1.16
UBFD1O14562 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBFD1O14562 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBFD1O14562 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBFD1O14562 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBFD1O14562 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC22.26■■□□□ 1.15
UBFD1O14562 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBFD1O14562 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC22.26■■□□□ 1.15
UBFD1O14562 GALC-202ENST00000393568 2054 ntTSL 2 BASIC22.26■■□□□ 1.15
UBFD1O14562 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.26■■□□□ 1.15
UBFD1O14562 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC22.26■■□□□ 1.15
UBFD1O14562 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBFD1O14562 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
UBFD1O14562 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC22.26■■□□□ 1.15
UBFD1O14562 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBFD1O14562 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.25■■□□□ 1.15
UBFD1O14562 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBFD1O14562 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBFD1O14562 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UBFD1O14562 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBFD1O14562 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBFD1O14562 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
UBFD1O14562 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBFD1O14562 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UBFD1O14562 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
UBFD1O14562 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC22.24■■□□□ 1.15
UBFD1O14562 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
UBFD1O14562 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
UBFD1O14562 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
UBFD1O14562 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
UBFD1O14562 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.24■■□□□ 1.15
UBFD1O14562 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.23■■□□□ 1.15
UBFD1O14562 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC22.23■■□□□ 1.15
UBFD1O14562 AC092068.2-201ENST00000590491 1708 ntBASIC22.23■■□□□ 1.15
UBFD1O14562 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
UBFD1O14562 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
UBFD1O14562 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
UBFD1O14562 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC22.23■■□□□ 1.15
UBFD1O14562 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
UBFD1O14562 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
UBFD1O14562 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
UBFD1O14562 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
UBFD1O14562 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
UBFD1O14562 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
UBFD1O14562 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.22■■□□□ 1.15
UBFD1O14562 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
UBFD1O14562 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
UBFD1O14562 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
UBFD1O14562 AC131274.2-201ENST00000580697 1507 ntBASIC22.21■■□□□ 1.15
UBFD1O14562 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC22.21■■□□□ 1.15
UBFD1O14562 DUSP8P3-201ENST00000399571 1760 ntBASIC22.21■■□□□ 1.15
UBFD1O14562 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UBFD1O14562 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UBFD1O14562 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
UBFD1O14562 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
UBFD1O14562 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UBFD1O14562 H19-210ENST00000439725 1929 ntTSL 2 BASIC22.21■■□□□ 1.15
UBFD1O14562 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UBFD1O14562 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC22.21■■□□□ 1.15
UBFD1O14562 AL022069.1-201ENST00000568025 1636 ntBASIC22.2■■□□□ 1.15
UBFD1O14562 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.2■■□□□ 1.14
UBFD1O14562 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
UBFD1O14562 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
UBFD1O14562 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
UBFD1O14562 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC22.2■■□□□ 1.14
UBFD1O14562 AC011551.1-201ENST00000614101 683 ntBASIC22.2■■□□□ 1.14
UBFD1O14562 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
UBFD1O14562 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
UBFD1O14562 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
UBFD1O14562 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC22.2■■□□□ 1.14
UBFD1O14562 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
UBFD1O14562 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC22.19■■□□□ 1.14
UBFD1O14562 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.19■■□□□ 1.14
UBFD1O14562 AC079834.2-201ENST00000609776 1949 ntBASIC22.19■■□□□ 1.14
UBFD1O14562 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
UBFD1O14562 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
UBFD1O14562 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
UBFD1O14562 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
UBFD1O14562 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
UBFD1O14562 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
UBFD1O14562 DUX4L18-201ENST00000553347 1267 ntBASIC22.18■■□□□ 1.14
UBFD1O14562 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC22.18■■□□□ 1.14
UBFD1O14562 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
UBFD1O14562 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
UBFD1O14562 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
UBFD1O14562 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.17■■□□□ 1.14
UBFD1O14562 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.17■■□□□ 1.14
UBFD1O14562 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
UBFD1O14562 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
UBFD1O14562 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC22.17■■□□□ 1.14
UBFD1O14562 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms