Protein–RNA interactions for Protein: A6NDZ8

MBD3L4, Putative methyl-CpG-binding domain protein 3-like 4, humanhuman

Predicted RBP Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3L4A6NDZ8 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MBD3L4A6NDZ8 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MBD3L4A6NDZ8 AC135279.3-201ENST00000610945 1311 ntBASIC20.29■□□□□ 0.84
MBD3L4A6NDZ8 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
MBD3L4A6NDZ8 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
MBD3L4A6NDZ8 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.29■□□□□ 0.84
MBD3L4A6NDZ8 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MBD3L4A6NDZ8 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MBD3L4A6NDZ8 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MBD3L4A6NDZ8 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MBD3L4A6NDZ8 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MBD3L4A6NDZ8 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
MBD3L4A6NDZ8 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.29■□□□□ 0.84
MBD3L4A6NDZ8 AC022211.4-201ENST00000625094 2161 ntBASIC20.28■□□□□ 0.84
MBD3L4A6NDZ8 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MBD3L4A6NDZ8 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.28■□□□□ 0.84
MBD3L4A6NDZ8 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.28■□□□□ 0.84
MBD3L4A6NDZ8 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.28■□□□□ 0.84
MBD3L4A6NDZ8 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.28■□□□□ 0.84
MBD3L4A6NDZ8 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.28■□□□□ 0.84
MBD3L4A6NDZ8 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MBD3L4A6NDZ8 AP003733.4-201ENST00000623785 1697 ntBASIC20.28■□□□□ 0.84
MBD3L4A6NDZ8 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.28■□□□□ 0.84
MBD3L4A6NDZ8 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MBD3L4A6NDZ8 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MBD3L4A6NDZ8 AC009102.2-201ENST00000606772 1639 ntBASIC20.27■□□□□ 0.84
MBD3L4A6NDZ8 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MBD3L4A6NDZ8 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.27■□□□□ 0.84
MBD3L4A6NDZ8 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.27■□□□□ 0.84
MBD3L4A6NDZ8 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.27■□□□□ 0.84
MBD3L4A6NDZ8 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.27■□□□□ 0.84
MBD3L4A6NDZ8 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MBD3L4A6NDZ8 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
MBD3L4A6NDZ8 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.27■□□□□ 0.84
MBD3L4A6NDZ8 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
MBD3L4A6NDZ8 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.27■□□□□ 0.83
MBD3L4A6NDZ8 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
MBD3L4A6NDZ8 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MBD3L4A6NDZ8 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
MBD3L4A6NDZ8 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
MBD3L4A6NDZ8 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
MBD3L4A6NDZ8 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MBD3L4A6NDZ8 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.26■□□□□ 0.83
MBD3L4A6NDZ8 AC024257.2-201ENST00000549699 147 ntBASIC20.26■□□□□ 0.83
MBD3L4A6NDZ8 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.26■□□□□ 0.83
MBD3L4A6NDZ8 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MBD3L4A6NDZ8 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MBD3L4A6NDZ8 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MBD3L4A6NDZ8 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
MBD3L4A6NDZ8 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MBD3L4A6NDZ8 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
MBD3L4A6NDZ8 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MBD3L4A6NDZ8 EDA-201ENST00000338901 1233 ntBASIC20.25■□□□□ 0.83
MBD3L4A6NDZ8 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
MBD3L4A6NDZ8 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MBD3L4A6NDZ8 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.25■□□□□ 0.83
MBD3L4A6NDZ8 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.25■□□□□ 0.83
MBD3L4A6NDZ8 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.25■□□□□ 0.83
MBD3L4A6NDZ8 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MBD3L4A6NDZ8 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
MBD3L4A6NDZ8 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MBD3L4A6NDZ8 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MBD3L4A6NDZ8 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MBD3L4A6NDZ8 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.24■□□□□ 0.83
MBD3L4A6NDZ8 AL031432.3-201ENST00000607698 485 ntBASIC20.24■□□□□ 0.83
MBD3L4A6NDZ8 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MBD3L4A6NDZ8 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MBD3L4A6NDZ8 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
MBD3L4A6NDZ8 SYT6-210ENST00000641643 1587 ntBASIC20.24■□□□□ 0.83
MBD3L4A6NDZ8 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MBD3L4A6NDZ8 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MBD3L4A6NDZ8 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MBD3L4A6NDZ8 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MBD3L4A6NDZ8 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.23■□□□□ 0.83
MBD3L4A6NDZ8 C17orf82-201ENST00000623772 1530 ntBASIC20.23■□□□□ 0.83
MBD3L4A6NDZ8 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
MBD3L4A6NDZ8 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
MBD3L4A6NDZ8 AC142381.2-201ENST00000566120 298 ntBASIC20.23■□□□□ 0.83
MBD3L4A6NDZ8 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MBD3L4A6NDZ8 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MBD3L4A6NDZ8 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
MBD3L4A6NDZ8 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MBD3L4A6NDZ8 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
MBD3L4A6NDZ8 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MBD3L4A6NDZ8 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MBD3L4A6NDZ8 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
MBD3L4A6NDZ8 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.22■□□□□ 0.83
MBD3L4A6NDZ8 SUDS3P1-201ENST00000505831 966 ntBASIC20.22■□□□□ 0.83
MBD3L4A6NDZ8 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.21■□□□□ 0.83
MBD3L4A6NDZ8 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MBD3L4A6NDZ8 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MBD3L4A6NDZ8 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
MBD3L4A6NDZ8 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MBD3L4A6NDZ8 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.21■□□□□ 0.83
MBD3L4A6NDZ8 AC099791.2-201ENST00000605725 427 ntBASIC20.21■□□□□ 0.83
MBD3L4A6NDZ8 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.21■□□□□ 0.83
MBD3L4A6NDZ8 AL355001.2-201ENST00000620617 1191 ntBASIC20.21■□□□□ 0.83
MBD3L4A6NDZ8 ALDH1A3-203ENST00000557963 1670 ntBASIC20.21■□□□□ 0.83
MBD3L4A6NDZ8 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.21■□□□□ 0.83
MBD3L4A6NDZ8 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 141.5 ms