Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV1-1A0A0B4J248 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.95■□□□□ 0.46
TRAV1-1A0A0B4J248 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV1-1A0A0B4J248 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC17.95■□□□□ 0.46
TRAV1-1A0A0B4J248 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV1-1A0A0B4J248 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV1-1A0A0B4J248 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
TRAV1-1A0A0B4J248 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV1-1A0A0B4J248 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC17.95■□□□□ 0.46
TRAV1-1A0A0B4J248 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
TRAV1-1A0A0B4J248 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV1-1A0A0B4J248 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.94■□□□□ 0.46
TRAV1-1A0A0B4J248 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC17.94■□□□□ 0.46
TRAV1-1A0A0B4J248 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC17.94■□□□□ 0.46
TRAV1-1A0A0B4J248 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV1-1A0A0B4J248 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV1-1A0A0B4J248 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV1-1A0A0B4J248 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV1-1A0A0B4J248 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV1-1A0A0B4J248 MYB-221ENST00000527615 2381 ntTSL 5 BASIC17.94■□□□□ 0.46
TRAV1-1A0A0B4J248 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV1-1A0A0B4J248 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV1-1A0A0B4J248 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV1-1A0A0B4J248 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV1-1A0A0B4J248 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV1-1A0A0B4J248 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC17.93■□□□□ 0.46
TRAV1-1A0A0B4J248 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV1-1A0A0B4J248 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV1-1A0A0B4J248 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV1-1A0A0B4J248 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV1-1A0A0B4J248 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TRAV1-1A0A0B4J248 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV1-1A0A0B4J248 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-1A0A0B4J248 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-1A0A0B4J248 MIR3665-201ENST00000578708 105 ntBASIC17.92■□□□□ 0.46
TRAV1-1A0A0B4J248 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-1A0A0B4J248 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-1A0A0B4J248 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-1A0A0B4J248 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-1A0A0B4J248 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAV1-1A0A0B4J248 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-1A0A0B4J248 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-1A0A0B4J248 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-1A0A0B4J248 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAV1-1A0A0B4J248 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-1A0A0B4J248 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TRAV1-1A0A0B4J248 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-1A0A0B4J248 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAV1-1A0A0B4J248 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-1A0A0B4J248 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-1A0A0B4J248 BID-212ENST00000614949 1988 ntTSL 5 BASIC17.9■□□□□ 0.46
TRAV1-1A0A0B4J248 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-1A0A0B4J248 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.9■□□□□ 0.46
TRAV1-1A0A0B4J248 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAV1-1A0A0B4J248 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
TRAV1-1A0A0B4J248 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV1-1A0A0B4J248 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV1-1A0A0B4J248 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC17.89■□□□□ 0.45
TRAV1-1A0A0B4J248 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC17.89■□□□□ 0.45
TRAV1-1A0A0B4J248 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV1-1A0A0B4J248 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
TRAV1-1A0A0B4J248 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV1-1A0A0B4J248 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.89■□□□□ 0.45
TRAV1-1A0A0B4J248 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV1-1A0A0B4J248 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV1-1A0A0B4J248 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV1-1A0A0B4J248 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV1-1A0A0B4J248 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC17.87■□□□□ 0.45
TRAV1-1A0A0B4J248 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV1-1A0A0B4J248 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.87■□□□□ 0.45
TRAV1-1A0A0B4J248 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV1-1A0A0B4J248 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV1-1A0A0B4J248 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
TRAV1-1A0A0B4J248 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC17.87■□□□□ 0.45
TRAV1-1A0A0B4J248 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.87■□□□□ 0.45
TRAV1-1A0A0B4J248 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV1-1A0A0B4J248 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC17.87■□□□□ 0.45
TRAV1-1A0A0B4J248 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV1-1A0A0B4J248 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms