Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV3A0A0B4J244 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV3A0A0B4J244 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV3A0A0B4J244 CD37-213ENST00000598095 1598 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAV3A0A0B4J244 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAV3A0A0B4J244 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
TRAV3A0A0B4J244 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV3A0A0B4J244 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV3A0A0B4J244 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV3A0A0B4J244 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV3A0A0B4J244 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV3A0A0B4J244 DUX4L18-201ENST00000553347 1267 ntBASIC18.41■□□□□ 0.54
TRAV3A0A0B4J244 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV3A0A0B4J244 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
TRAV3A0A0B4J244 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV3A0A0B4J244 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC18.41■□□□□ 0.54
TRAV3A0A0B4J244 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV3A0A0B4J244 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV3A0A0B4J244 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV3A0A0B4J244 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TRAV3A0A0B4J244 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV3A0A0B4J244 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV3A0A0B4J244 ANOS2P-203ENST00000472227 1816 ntBASIC18.4■□□□□ 0.54
TRAV3A0A0B4J244 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.4■□□□□ 0.54
TRAV3A0A0B4J244 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC18.4■□□□□ 0.54
TRAV3A0A0B4J244 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV3A0A0B4J244 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC18.4■□□□□ 0.54
TRAV3A0A0B4J244 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC18.4■□□□□ 0.54
TRAV3A0A0B4J244 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV3A0A0B4J244 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV3A0A0B4J244 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV3A0A0B4J244 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV3A0A0B4J244 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.39■□□□□ 0.53
TRAV3A0A0B4J244 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC18.39■□□□□ 0.53
TRAV3A0A0B4J244 BRD4-212ENST00000630599 726 ntTSL 2 BASIC18.39■□□□□ 0.53
TRAV3A0A0B4J244 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV3A0A0B4J244 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18.39■□□□□ 0.53
TRAV3A0A0B4J244 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV3A0A0B4J244 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC18.39■□□□□ 0.53
TRAV3A0A0B4J244 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
TRAV3A0A0B4J244 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV3A0A0B4J244 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV3A0A0B4J244 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV3A0A0B4J244 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC18.37■□□□□ 0.53
TRAV3A0A0B4J244 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV3A0A0B4J244 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.37■□□□□ 0.53
TRAV3A0A0B4J244 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV3A0A0B4J244 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV3A0A0B4J244 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC18.37■□□□□ 0.53
TRAV3A0A0B4J244 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV3A0A0B4J244 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.37■□□□□ 0.53
TRAV3A0A0B4J244 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV3A0A0B4J244 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TRAV3A0A0B4J244 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV3A0A0B4J244 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV3A0A0B4J244 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV3A0A0B4J244 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.36■□□□□ 0.53
TRAV3A0A0B4J244 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC18.36■□□□□ 0.53
TRAV3A0A0B4J244 AL161729.1-201ENST00000604104 1402 ntBASIC18.36■□□□□ 0.53
TRAV3A0A0B4J244 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC18.35■□□□□ 0.53
TRAV3A0A0B4J244 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV3A0A0B4J244 AL022069.1-201ENST00000568025 1636 ntBASIC18.35■□□□□ 0.53
TRAV3A0A0B4J244 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV3A0A0B4J244 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV3A0A0B4J244 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV3A0A0B4J244 HYI-210ENST00000486909 905 ntTSL 5 BASIC18.35■□□□□ 0.53
TRAV3A0A0B4J244 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV3A0A0B4J244 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV3A0A0B4J244 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
TRAV3A0A0B4J244 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 AC131274.2-201ENST00000580697 1507 ntBASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 GALC-202ENST00000393568 2054 ntTSL 2 BASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 AC139795.1-202ENST00000500444 432 ntBASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 ABHD17AP5-201ENST00000580133 923 ntBASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV3A0A0B4J244 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms