Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 AC021305.1-201ENST00000520656 1514 ntBASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 AC069224.1-201ENST00000566372 1715 ntBASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 CTBP2P8-201ENST00000422584 1330 ntBASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ZC3H4Q9UPT8 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 OR6D1P-203ENST00000641209 4860 ntBASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 ERP29P1-201ENST00000442902 706 ntBASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 AC026470.1-201ENST00000478038 846 ntBASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 PGAM1P12-201ENST00000505622 748 ntBASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 HERC2P11-201ENST00000562845 725 ntBASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 AC100756.2-201ENST00000569537 736 ntBASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 AP005264.6-204ENST00000588436 719 ntBASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 AC007250.1-201ENST00000608934 338 ntBASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 ZBED1P1-201ENST00000502364 1930 ntBASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 AC068418.2-201ENST00000577309 3703 ntBASIC17.81■□□□□ 0.44
ZC3H4Q9UPT8 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 RN7SKP109-201ENST00000410592 316 ntBASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 CSNK1G2P1-201ENST00000442675 955 ntBASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 TP53-221ENST00000615910 1149 ntTSL 5 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 MIR6816-201ENST00000620368 66 ntBASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZC3H4Q9UPT8 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms