Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 WASH4P-201ENST00000564273 1246 ntBASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 TP53TG3HP-202ENST00000569755 579 ntBASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 AC092364.2-202ENST00000597012 1073 ntBASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
VPS29Q9UBQ0 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 AC092135.3-201ENST00000624151 1846 ntBASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 AC152010.1-201ENST00000415779 2006 ntBASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 DGCR5-201ENST00000399539 862 ntBASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS29Q9UBQ0 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms