Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 KRT8P19-201ENST00000551916 1455 ntBASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 FKBP4P6-201ENST00000457486 1332 ntBASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 TUBBP5-203ENST00000508529 1334 ntBASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 CRCP-204ENST00000398684 492 ntTSL 2 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 AL008707.1-201ENST00000422498 534 ntBASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 AL133466.1-201ENST00000447582 150 ntBASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 IMP3P2-201ENST00000489760 475 ntBASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 AC091544.8-201ENST00000619490 361 ntBASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
TM9SF3Q9HD45 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 AC009090.5-201ENST00000624886 2285 ntBASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 AC106881.1-201ENST00000605849 3329 ntBASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 GRK6P1-201ENST00000400595 1711 ntBASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 AC126755.1-201ENST00000525846 6405 ntBASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 RN7SL11P-201ENST00000471305 293 ntBASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 AC022217.1-201ENST00000521069 738 ntBASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms