Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 AC026748.1-201ENST00000624349 3251 ntBASIC11.55□□□□□ -0.56
CCDC140Q96MF4 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 AGGF1P1-201ENST00000509500 2073 ntBASIC11.55□□□□□ -0.56
CCDC140Q96MF4 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 OR2I1P-210ENST00000642037 4691 ntBASIC11.54□□□□□ -0.56
CCDC140Q96MF4 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 MIR600HG-201ENST00000449175 5984 ntBASIC11.54□□□□□ -0.56
CCDC140Q96MF4 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 MPV17-205ENST00000402310 906 ntTSL 5 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 RN7SKP175-201ENST00000408472 289 ntBASIC11.54□□□□□ -0.56
CCDC140Q96MF4 CNN2P8-201ENST00000421872 913 ntBASIC11.54□□□□□ -0.56
CCDC140Q96MF4 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 RBM7-207ENST00000544582 692 ntTSL 3 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 VPS18-202ENST00000558474 873 ntTSL 3 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 APOC4-201ENST00000591600 348 ntTSL 3 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 OR10B1P-201ENST00000601666 907 ntBASIC11.54□□□□□ -0.56
CCDC140Q96MF4 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 AC009093.2-202ENST00000620513 2079 ntBASIC11.54□□□□□ -0.56
CCDC140Q96MF4 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 OR2I1P-209ENST00000641730 5365 ntBASIC11.54□□□□□ -0.56
CCDC140Q96MF4 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 ENKUR-202ENST00000376363 1318 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 MRPL37P1-201ENST00000592451 1337 ntBASIC11.54□□□□□ -0.56
CCDC140Q96MF4 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC11.54□□□□□ -0.56
CCDC140Q96MF4 AC005089.1-201ENST00000619486 2241 ntBASIC11.54□□□□□ -0.56
CCDC140Q96MF4 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms