Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 FKBP4P6-201ENST00000457486 1332 ntBASIC16.52■□□□□ 0.24
HPS3Q969F9 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HPS3Q969F9 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HPS3Q969F9 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.52■□□□□ 0.24
HPS3Q969F9 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
HPS3Q969F9 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
HPS3Q969F9 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HPS3Q969F9 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HPS3Q969F9 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HPS3Q969F9 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HPS3Q969F9 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
HPS3Q969F9 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC16.52■□□□□ 0.24
HPS3Q969F9 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
HPS3Q969F9 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.52■□□□□ 0.24
HPS3Q969F9 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HPS3Q969F9 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC16.52■□□□□ 0.24
HPS3Q969F9 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC16.52■□□□□ 0.24
HPS3Q969F9 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HPS3Q969F9 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.52■□□□□ 0.24
HPS3Q969F9 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.52■□□□□ 0.24
HPS3Q969F9 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.52■□□□□ 0.24
HPS3Q969F9 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.52■□□□□ 0.24
HPS3Q969F9 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.52■□□□□ 0.24
HPS3Q969F9 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HPS3Q969F9 AC015936.2-201ENST00000593177 259 ntBASIC16.52■□□□□ 0.24
HPS3Q969F9 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.52■□□□□ 0.24
HPS3Q969F9 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HPS3Q969F9 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HPS3Q969F9 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HPS3Q969F9 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HPS3Q969F9 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
HPS3Q969F9 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HPS3Q969F9 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HPS3Q969F9 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HPS3Q969F9 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HPS3Q969F9 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HPS3Q969F9 AC015802.1-201ENST00000588104 1449 ntBASIC16.52■□□□□ 0.23
HPS3Q969F9 AGGF1P1-201ENST00000509500 2073 ntBASIC16.52■□□□□ 0.23
HPS3Q969F9 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
HPS3Q969F9 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC16.52■□□□□ 0.23
HPS3Q969F9 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC16.52■□□□□ 0.23
HPS3Q969F9 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
HPS3Q969F9 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HPS3Q969F9 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC16.51■□□□□ 0.23
HPS3Q969F9 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.51■□□□□ 0.23
HPS3Q969F9 AL136172.1-201ENST00000598590 1394 ntBASIC16.51■□□□□ 0.23
HPS3Q969F9 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HPS3Q969F9 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC16.51■□□□□ 0.23
HPS3Q969F9 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC16.51■□□□□ 0.23
HPS3Q969F9 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
HPS3Q969F9 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC16.51■□□□□ 0.23
HPS3Q969F9 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.51■□□□□ 0.23
HPS3Q969F9 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
HPS3Q969F9 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.51■□□□□ 0.23
HPS3Q969F9 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.51■□□□□ 0.23
HPS3Q969F9 AC131206.1-201ENST00000538078 1211 ntBASIC16.51■□□□□ 0.23
HPS3Q969F9 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.51■□□□□ 0.23
HPS3Q969F9 AC005225.4-201ENST00000557330 545 ntBASIC16.51■□□□□ 0.23
HPS3Q969F9 RN7SL48P-201ENST00000579283 293 ntBASIC16.51■□□□□ 0.23
HPS3Q969F9 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.51■□□□□ 0.23
HPS3Q969F9 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
HPS3Q969F9 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
HPS3Q969F9 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
HPS3Q969F9 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HPS3Q969F9 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.5■□□□□ 0.23
HPS3Q969F9 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
HPS3Q969F9 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.5■□□□□ 0.23
HPS3Q969F9 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HPS3Q969F9 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HPS3Q969F9 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HPS3Q969F9 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HPS3Q969F9 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HPS3Q969F9 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HPS3Q969F9 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HPS3Q969F9 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HPS3Q969F9 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.5■□□□□ 0.23
HPS3Q969F9 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms