Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 AC016397.2-201ENST00000624848 1985 ntBASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 BASP1P1-201ENST00000430708 665 ntBASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 EIF3FP3-201ENST00000434851 1086 ntBASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 AC022616.1-201ENST00000518688 554 ntBASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 AL359711.2-201ENST00000563105 872 ntBASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 KRT8P22-201ENST00000562317 1415 ntBASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
ATG4AQ8WYN0 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 BEND3P1-201ENST00000421591 1944 ntBASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 KLF2P2-201ENST00000416807 1039 ntBASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 AC098850.1-201ENST00000419919 790 ntBASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 UGT1A2P-201ENST00000454886 866 ntBASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 RRP7BP-205ENST00000566851 833 ntBASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.49■□□□□ 0.07
ATG4AQ8WYN0 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms