Protein–RNA interactions for Protein: Q8N9L1

ZIC4, Zinc finger protein ZIC 4, humanhuman

Predictions only

Length 334 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4Q8N9L1 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
ZIC4Q8N9L1 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.16□□□□□ -0.3
ZIC4Q8N9L1 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
ZIC4Q8N9L1 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.16□□□□□ -0.3
ZIC4Q8N9L1 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.16□□□□□ -0.3
ZIC4Q8N9L1 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ZIC4Q8N9L1 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ZIC4Q8N9L1 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ZIC4Q8N9L1 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
ZIC4Q8N9L1 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ZIC4Q8N9L1 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.16□□□□□ -0.3
ZIC4Q8N9L1 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
ZIC4Q8N9L1 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.16□□□□□ -0.3
ZIC4Q8N9L1 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 AC097359.2-201ENST00000604992 2389 ntBASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 AC010141.1-201ENST00000411585 623 ntBASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 TPT1P11-201ENST00000458482 498 ntBASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 AC100850.1-201ENST00000506768 649 ntBASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 AL583810.1-201ENST00000553344 1045 ntBASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 MIR4741-201ENST00000579822 90 ntBASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 AC008825.2-201ENST00000603374 718 ntBASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ZIC4Q8N9L1 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
ZIC4Q8N9L1 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 AC139712.1-201ENST00000378256 1875 ntBASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 AC005912.2-201ENST00000619492 2400 ntBASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
ZIC4Q8N9L1 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms