Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 NID2-208ENST00000617139 3827 ntTSL 5 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 F10-203ENST00000409306 1450 ntTSL 3 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 AC009779.1-201ENST00000551138 283 ntBASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 CHMP4BP1-201ENST00000556017 588 ntBASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 AL132994.2-201ENST00000603120 687 ntBASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 MVK-217ENST00000639206 367 ntTSL 5 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 AL805961.1-203ENST00000641078 1258 ntBASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
UBE3BQ7Z3V4 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 AC008132.1-202ENST00000342005 1389 ntBASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 AL662890.1-201ENST00000396818 632 ntBASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 AP000346.4-201ENST00000614827 381 ntBASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 AL590440.2-201ENST00000641973 1595 ntBASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 R3HDM2P2-201ENST00000401880 2116 ntBASIC18.46■□□□□ 0.55
UBE3BQ7Z3V4 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
UBE3BQ7Z3V4 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
UBE3BQ7Z3V4 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 AC006504.5-208ENST00000588784 2401 ntBASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 DBET-201ENST00000630918 3363 ntBASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms