Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
CX3CL1P78423 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
CX3CL1P78423 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CX3CL1P78423 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
CX3CL1P78423 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CX3CL1P78423 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CX3CL1P78423 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC12.1□□□□□ -0.47
CX3CL1P78423 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CX3CL1P78423 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
CX3CL1P78423 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC12.1□□□□□ -0.47
CX3CL1P78423 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC12.1□□□□□ -0.47
CX3CL1P78423 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CX3CL1P78423 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.1□□□□□ -0.47
CX3CL1P78423 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
CX3CL1P78423 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CX3CL1P78423 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CX3CL1P78423 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CX3CL1P78423 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
CX3CL1P78423 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC12.09□□□□□ -0.47
CX3CL1P78423 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 LILRP1-201ENST00000444199 1370 ntBASIC12.09□□□□□ -0.47
CX3CL1P78423 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
CX3CL1P78423 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 ACKR1-201ENST00000368121 1240 ntBASIC12.09□□□□□ -0.47
CX3CL1P78423 AC098614.1-201ENST00000368528 745 ntBASIC12.09□□□□□ -0.47
CX3CL1P78423 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 AP006294.1-201ENST00000415407 339 ntBASIC12.09□□□□□ -0.47
CX3CL1P78423 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 AC114812.1-204ENST00000449669 728 ntBASIC12.09□□□□□ -0.47
CX3CL1P78423 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC12.09□□□□□ -0.47
CX3CL1P78423 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC12.09□□□□□ -0.47
CX3CL1P78423 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
CX3CL1P78423 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 AP001063.1-201ENST00000568332 529 ntBASIC12.09□□□□□ -0.47
CX3CL1P78423 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC12.09□□□□□ -0.47
CX3CL1P78423 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 AC005252.2-201ENST00000624630 1141 ntBASIC12.09□□□□□ -0.47
CX3CL1P78423 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 AC025048.6-201ENST00000634326 1161 ntBASIC12.09□□□□□ -0.47
CX3CL1P78423 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
CX3CL1P78423 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
CX3CL1P78423 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC12.09□□□□□ -0.47
CX3CL1P78423 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC12.09□□□□□ -0.47
CX3CL1P78423 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC12.09□□□□□ -0.47
CX3CL1P78423 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
CX3CL1P78423 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CX3CL1P78423 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.47
CX3CL1P78423 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
CX3CL1P78423 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC12.08□□□□□ -0.47
CX3CL1P78423 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.47
CX3CL1P78423 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC12.08□□□□□ -0.47
CX3CL1P78423 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
CX3CL1P78423 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CX3CL1P78423 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CX3CL1P78423 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms