Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CKS1BP61024 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC10.59□□□□□ -0.71
CKS1BP61024 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC10.59□□□□□ -0.71
CKS1BP61024 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CKS1BP61024 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC10.58□□□□□ -0.71
CKS1BP61024 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC10.58□□□□□ -0.71
CKS1BP61024 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
CKS1BP61024 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 HERC3-203ENST00000407637 2634 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
CKS1BP61024 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 SCN1B-202ENST00000415950 4537 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
CKS1BP61024 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 SMAD1-215ENST00000515385 2085 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC10.58□□□□□ -0.72
CKS1BP61024 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 MROH4P-201ENST00000431302 1578 ntBASIC10.58□□□□□ -0.72
CKS1BP61024 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 DR1-202ENST00000370272 10148 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC10.58□□□□□ -0.72
CKS1BP61024 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC10.58□□□□□ -0.72
CKS1BP61024 AC004987.2-201ENST00000395959 1148 ntBASIC10.58□□□□□ -0.72
CKS1BP61024 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC10.58□□□□□ -0.72
CKS1BP61024 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC10.58□□□□□ -0.72
CKS1BP61024 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
CKS1BP61024 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC10.58□□□□□ -0.72
CKS1BP61024 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 AC010969.2-201ENST00000602458 3231 ntBASIC10.58□□□□□ -0.72
CKS1BP61024 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
CKS1BP61024 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 DOCK4-204ENST00000428084 7997 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
CKS1BP61024 TMEM120B-204ENST00000449592 7461 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 ALDH18A1-202ENST00000371224 3359 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 ARHGEF2-206ENST00000462460 4438 ntTSL 5 BASIC10.58□□□□□ -0.72
CKS1BP61024 ABCA3-201ENST00000301732 6609 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC10.58□□□□□ -0.72
CKS1BP61024 PRPF4-201ENST00000374198 2787 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
CKS1BP61024 LITAF-221ENST00000622633 2467 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
CKS1BP61024 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CKS1BP61024 AL691432.1-201ENST00000596308 1422 ntBASIC10.58□□□□□ -0.72
CKS1BP61024 BCAR1-209ENST00000546196 1340 ntBASIC10.58□□□□□ -0.72
CKS1BP61024 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 AGAP7P-201ENST00000582299 2062 ntBASIC10.57□□□□□ -0.72
CKS1BP61024 AGAP14-201ENST00000624701 2060 ntBASIC10.57□□□□□ -0.72
CKS1BP61024 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC10.57□□□□□ -0.72
CKS1BP61024 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
CKS1BP61024 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC10.57□□□□□ -0.72
CKS1BP61024 KCNMA1-232ENST00000638306 3811 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
CKS1BP61024 GPD1-201ENST00000301149 3082 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 CYB5RL-201ENST00000287899 5777 ntTSL 3 BASIC10.57□□□□□ -0.72
CKS1BP61024 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 LINC00893-215ENST00000618757 2347 ntTSL 2 BASIC10.57□□□□□ -0.72
CKS1BP61024 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
CKS1BP61024 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC10.57□□□□□ -0.72
CKS1BP61024 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC10.57□□□□□ -0.72
CKS1BP61024 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 BDNF-208ENST00000418212 4125 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CKS1BP61024 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms