Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.3■□□□□ 0.2
CLCN3P51790 AL157407.1-201ENST00000435784 904 ntBASIC16.3■□□□□ 0.2
CLCN3P51790 AL645933.1-201ENST00000440087 609 ntBASIC16.3■□□□□ 0.2
CLCN3P51790 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC16.3■□□□□ 0.2
CLCN3P51790 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.3■□□□□ 0.2
CLCN3P51790 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC16.3■□□□□ 0.2
CLCN3P51790 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.3■□□□□ 0.2
CLCN3P51790 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CLCN3P51790 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CLCN3P51790 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.3■□□□□ 0.2
CLCN3P51790 RHOQP1-201ENST00000555758 579 ntBASIC16.3■□□□□ 0.2
CLCN3P51790 CHMP4BP1-201ENST00000556017 588 ntBASIC16.3■□□□□ 0.2
CLCN3P51790 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.3■□□□□ 0.2
CLCN3P51790 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 AC084346.2-201ENST00000607097 949 ntBASIC16.3■□□□□ 0.2
CLCN3P51790 AL136295.7-201ENST00000619226 1200 ntBASIC16.3■□□□□ 0.2
CLCN3P51790 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.3■□□□□ 0.2
CLCN3P51790 AL805961.1-203ENST00000641078 1258 ntBASIC16.3■□□□□ 0.2
CLCN3P51790 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC16.3■□□□□ 0.2
CLCN3P51790 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CLCN3P51790 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CLCN3P51790 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CLCN3P51790 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
CLCN3P51790 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.3■□□□□ 0.2
CLCN3P51790 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.3■□□□□ 0.2
CLCN3P51790 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.29■□□□□ 0.2
CLCN3P51790 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
CLCN3P51790 AC008132.1-202ENST00000342005 1389 ntBASIC16.29■□□□□ 0.2
CLCN3P51790 FAM90A7P-201ENST00000382628 1395 ntBASIC16.29■□□□□ 0.2
CLCN3P51790 FAM90A23P-201ENST00000400136 1395 ntBASIC16.29■□□□□ 0.2
CLCN3P51790 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.29■□□□□ 0.2
CLCN3P51790 AC092135.3-201ENST00000624151 1846 ntBASIC16.29■□□□□ 0.2
CLCN3P51790 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
CLCN3P51790 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC16.29■□□□□ 0.2
CLCN3P51790 AC125604.1-201ENST00000496255 707 ntBASIC16.29■□□□□ 0.2
CLCN3P51790 MIR3619-201ENST00000579667 83 ntBASIC16.29■□□□□ 0.2
CLCN3P51790 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.29■□□□□ 0.2
CLCN3P51790 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
CLCN3P51790 AC009884.2-201ENST00000603110 324 ntBASIC16.29■□□□□ 0.2
CLCN3P51790 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.29■□□□□ 0.2
CLCN3P51790 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 AC067930.6-201ENST00000623257 4947 ntBASIC16.29■□□□□ 0.2
CLCN3P51790 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CLCN3P51790 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CLCN3P51790 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
CLCN3P51790 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CLCN3P51790 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN3P51790 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.28■□□□□ 0.2
CLCN3P51790 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN3P51790 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN3P51790 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
CLCN3P51790 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN3P51790 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN3P51790 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
CLCN3P51790 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CLCN3P51790 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN3P51790 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN3P51790 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CLCN3P51790 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN3P51790 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC16.28■□□□□ 0.2
CLCN3P51790 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN3P51790 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC16.28■□□□□ 0.2
CLCN3P51790 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN3P51790 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN3P51790 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC16.28■□□□□ 0.2
CLCN3P51790 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
CLCN3P51790 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC16.28■□□□□ 0.2
CLCN3P51790 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.28■□□□□ 0.2
CLCN3P51790 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms