Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 FAM86LP-201ENST00000478302 853 ntBASIC11.45□□□□□ -0.58
HLA-DMBP28068 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 FTH1-202ENST00000526640 786 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 ARL16-202ENST00000570561 768 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 API5-203ENST00000455725 2257 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DMBP28068 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 TKT-201ENST00000296289 1931 ntTSL 5 BASIC11.45□□□□□ -0.58
HLA-DMBP28068 BTBD7P1-201ENST00000447253 1453 ntBASIC11.44□□□□□ -0.58
HLA-DMBP28068 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 PNKD-204ENST00000436005 978 ntTSL 5 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 CRB3P1-201ENST00000449338 276 ntBASIC11.44□□□□□ -0.58
HLA-DMBP28068 VDAC1P7-201ENST00000462417 847 ntBASIC11.44□□□□□ -0.58
HLA-DMBP28068 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 AL049840.4-201ENST00000602422 811 ntBASIC11.44□□□□□ -0.58
HLA-DMBP28068 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
HLA-DMBP28068 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC11.44□□□□□ -0.58
HLA-DMBP28068 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 AC018665.1-201ENST00000622927 1362 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 AL138799.1-201ENST00000448213 1675 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms