Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC13.95□□□□□ -0.18
COL5A1P20908 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
COL5A1P20908 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.95□□□□□ -0.18
COL5A1P20908 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.95□□□□□ -0.18
COL5A1P20908 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC13.95□□□□□ -0.18
COL5A1P20908 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC13.95□□□□□ -0.18
COL5A1P20908 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.95□□□□□ -0.18
COL5A1P20908 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC13.95□□□□□ -0.18
COL5A1P20908 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC13.95□□□□□ -0.18
COL5A1P20908 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.95□□□□□ -0.18
COL5A1P20908 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC13.95□□□□□ -0.18
COL5A1P20908 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC13.94□□□□□ -0.18
COL5A1P20908 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC13.94□□□□□ -0.18
COL5A1P20908 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC13.94□□□□□ -0.18
COL5A1P20908 CELP-201ENST00000411440 1249 ntTSL 5 BASIC13.94□□□□□ -0.18
COL5A1P20908 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC13.94□□□□□ -0.18
COL5A1P20908 CD164-210ENST00000512821 964 ntTSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC13.94□□□□□ -0.18
COL5A1P20908 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
COL5A1P20908 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.94□□□□□ -0.18
COL5A1P20908 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC13.94□□□□□ -0.18
COL5A1P20908 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.94□□□□□ -0.18
COL5A1P20908 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
COL5A1P20908 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL5A1P20908 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC13.94□□□□□ -0.18
COL5A1P20908 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
COL5A1P20908 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 API5-208ENST00000531273 1868 ntTSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 NHP2-202ENST00000314397 599 ntTSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 PYY2-201ENST00000315776 282 ntBASIC13.94□□□□□ -0.18
COL5A1P20908 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC13.94□□□□□ -0.18
COL5A1P20908 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
COL5A1P20908 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.94□□□□□ -0.18
COL5A1P20908 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
COL5A1P20908 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC13.94□□□□□ -0.18
COL5A1P20908 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC13.94□□□□□ -0.18
COL5A1P20908 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC13.94□□□□□ -0.18
COL5A1P20908 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
COL5A1P20908 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
COL5A1P20908 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
COL5A1P20908 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
COL5A1P20908 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.94□□□□□ -0.18
COL5A1P20908 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL5A1P20908 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL5A1P20908 AJ011931.1-201ENST00000618749 2492 ntBASIC13.94□□□□□ -0.18
COL5A1P20908 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC13.93□□□□□ -0.18
COL5A1P20908 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
COL5A1P20908 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms