Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 AL009178.2-201ENST00000597278 2719 ntBASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 AC079776.1-201ENST00000401540 1152 ntBASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 AC112492.5-201ENST00000421897 457 ntBASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 OR10B1P-201ENST00000601666 907 ntBASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 WNT11-204ENST00000621122 789 ntTSL 5 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 AC007191.1-201ENST00000623179 2995 ntBASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 AL136172.1-201ENST00000598590 1394 ntBASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMC4Q9NTJ3 AMT-204ENST00000427987 1646 ntTSL 5 BASIC19.14■□□□□ 0.66
SMC4Q9NTJ3 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
SMC4Q9NTJ3 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.66
SMC4Q9NTJ3 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC19.14■□□□□ 0.66
SMC4Q9NTJ3 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 ARSEP1-201ENST00000420443 635 ntBASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 AC106886.1-201ENST00000568660 600 ntBASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 AL162274.1-201ENST00000617191 1098 ntBASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 AC006453.4-201ENST00000636949 1252 ntBASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 AL354989.2-201ENST00000435838 1540 ntBASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 AC092135.3-201ENST00000624151 1846 ntBASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC19.14■□□□□ 0.65
SMC4Q9NTJ3 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 RN7SKP175-201ENST00000408472 289 ntBASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms