Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AC006449.6-201ENST00000612330 2296 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 HNRNPA1P32-201ENST00000396326 963 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AC016700.1-201ENST00000429424 312 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 ST3GAL6-202ENST00000394162 3571 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 ZEB1-AS1-208ENST00000607166 2503 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AC007787.1-201ENST00000588095 1583 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 KRTAP10-13P-201ENST00000412914 571 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AC010328.2-201ENST00000597698 1111 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AC148477.4-201ENST00000613430 1793 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 KCNT1-213ENST00000630792 3606 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 FER1L4-208ENST00000611673 3860 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CCDC97-201ENST00000269967 3322 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 KRT8P13-201ENST00000463294 1010 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AP003171.2-201ENST00000528208 925 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AC079316.1-201ENST00000548397 411 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 IGSF9-202ENST00000368094 4044 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CAPN10-AS1-201ENST00000567819 4000 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 TEX30-203ENST00000376022 828 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SMS-201ENST00000379404 1174 ntTSL 3 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms