Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 RPS14P4-201ENST00000415880 418 ntBASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 FAM207CP-201ENST00000443486 507 ntBASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 SERBP1P3-201ENST00000459980 809 ntBASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 AL590560.3-201ENST00000623350 461 ntBASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 AC099521.3-201ENST00000624251 2938 ntBASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 TPT1P11-201ENST00000458482 498 ntBASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 AC009118.2-201ENST00000613275 655 ntBASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 AL138828.2-201ENST00000615812 383 ntBASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 AC055811.4-201ENST00000624039 1754 ntBASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
DEPDC4Q8N2C3 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
DEPDC4Q8N2C3 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms