Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 ENPP7P8-202ENST00000527856 1345 ntBASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 AL135901.1-201ENST00000451812 333 ntBASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 AL451007.2-201ENST00000632004 563 ntBASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC88AQ3V6T2 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC88AQ3V6T2 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
CCDC88AQ3V6T2 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC88AQ3V6T2 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC88AQ3V6T2 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC88AQ3V6T2 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC88AQ3V6T2 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 AL118522.1-201ENST00000611368 560 ntBASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 PARN-202ENST00000420015 2360 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC88AQ3V6T2 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 CISD2-202ENST00000503643 808 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 AC012073.1-201ENST00000606114 1108 ntBASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 PTPN20CP-201ENST00000614090 920 ntBASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms