Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
UBA52P62987 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.03□□□□□ -0.32
UBA52P62987 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC13.03□□□□□ -0.32
UBA52P62987 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
UBA52P62987 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
UBA52P62987 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
UBA52P62987 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.32
UBA52P62987 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
UBA52P62987 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
UBA52P62987 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
UBA52P62987 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
UBA52P62987 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC13.02□□□□□ -0.32
UBA52P62987 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
UBA52P62987 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
UBA52P62987 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
UBA52P62987 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
UBA52P62987 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
UBA52P62987 AC152010.1-201ENST00000415779 2006 ntBASIC13.02□□□□□ -0.33
UBA52P62987 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.02□□□□□ -0.33
UBA52P62987 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.02□□□□□ -0.33
UBA52P62987 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.02□□□□□ -0.33
UBA52P62987 ACA64.2-201ENST00000459014 129 ntBASIC13.02□□□□□ -0.33
UBA52P62987 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC13.02□□□□□ -0.33
UBA52P62987 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC13.02□□□□□ -0.33
UBA52P62987 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 RAB35-202ENST00000534951 939 ntTSL 2 BASIC13.02□□□□□ -0.33
UBA52P62987 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC13.02□□□□□ -0.33
UBA52P62987 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC13.02□□□□□ -0.33
UBA52P62987 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.02□□□□□ -0.33
UBA52P62987 AC026979.3-201ENST00000607315 403 ntBASIC13.02□□□□□ -0.33
UBA52P62987 MIR6805-201ENST00000615055 62 ntBASIC13.02□□□□□ -0.33
UBA52P62987 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.02□□□□□ -0.33
UBA52P62987 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC13.02□□□□□ -0.33
UBA52P62987 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.02□□□□□ -0.33
UBA52P62987 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.02□□□□□ -0.33
UBA52P62987 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC13.02□□□□□ -0.33
UBA52P62987 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
UBA52P62987 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.02□□□□□ -0.33
UBA52P62987 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
UBA52P62987 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC13.01□□□□□ -0.33
UBA52P62987 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
UBA52P62987 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.01□□□□□ -0.33
UBA52P62987 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC13.01□□□□□ -0.33
UBA52P62987 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
UBA52P62987 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC13.01□□□□□ -0.33
UBA52P62987 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC13.01□□□□□ -0.33
UBA52P62987 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.01□□□□□ -0.33
UBA52P62987 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 MIR1909-201ENST00000411312 80 ntBASIC13.01□□□□□ -0.33
UBA52P62987 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.01□□□□□ -0.33
UBA52P62987 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC13.01□□□□□ -0.33
UBA52P62987 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 AC114501.2-201ENST00000439631 535 ntBASIC13.01□□□□□ -0.33
UBA52P62987 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBA52P62987 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.01□□□□□ -0.33
UBA52P62987 SPDYE18-201ENST00000510091 1050 ntBASIC13.01□□□□□ -0.33
UBA52P62987 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC13.01□□□□□ -0.33
UBA52P62987 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms