Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.41□□□□□ -0.26
CLRN1P58418 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.41□□□□□ -0.26
CLRN1P58418 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.41□□□□□ -0.26
CLRN1P58418 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
CLRN1P58418 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
CLRN1P58418 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CLRN1P58418 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.41□□□□□ -0.26
CLRN1P58418 AL009178.2-201ENST00000597278 2719 ntBASIC13.41□□□□□ -0.26
CLRN1P58418 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.4□□□□□ -0.26
CLRN1P58418 AC092053.3-201ENST00000641308 4975 ntBASIC13.4□□□□□ -0.26
CLRN1P58418 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.26
CLRN1P58418 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 AC140479.7-201ENST00000636301 2332 ntBASIC13.4□□□□□ -0.26
CLRN1P58418 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.4□□□□□ -0.26
CLRN1P58418 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.4□□□□□ -0.26
CLRN1P58418 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 AC093433.1-201ENST00000458048 571 ntBASIC13.4□□□□□ -0.26
CLRN1P58418 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC13.4□□□□□ -0.26
CLRN1P58418 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.4□□□□□ -0.26
CLRN1P58418 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 ABBA01031660.1-201ENST00000635219 756 ntBASIC13.4□□□□□ -0.26
CLRN1P58418 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.4□□□□□ -0.26
CLRN1P58418 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
CLRN1P58418 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC13.4□□□□□ -0.26
CLRN1P58418 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.4□□□□□ -0.26
CLRN1P58418 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
CLRN1P58418 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
CLRN1P58418 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.4□□□□□ -0.26
CLRN1P58418 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLRN1P58418 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
CLRN1P58418 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.4□□□□□ -0.26
CLRN1P58418 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
CLRN1P58418 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.27
CLRN1P58418 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.27
CLRN1P58418 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
CLRN1P58418 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.27
CLRN1P58418 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.39□□□□□ -0.27
CLRN1P58418 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.39□□□□□ -0.27
CLRN1P58418 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CLRN1P58418 AC126335.2-201ENST00000623362 4637 ntBASIC13.39□□□□□ -0.27
CLRN1P58418 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.39□□□□□ -0.27
CLRN1P58418 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.39□□□□□ -0.27
CLRN1P58418 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.39□□□□□ -0.27
CLRN1P58418 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.39□□□□□ -0.27
CLRN1P58418 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.39□□□□□ -0.27
CLRN1P58418 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC13.39□□□□□ -0.27
CLRN1P58418 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CLRN1P58418 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CLRN1P58418 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
CLRN1P58418 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CLRN1P58418 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.39□□□□□ -0.27
CLRN1P58418 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.39□□□□□ -0.27
CLRN1P58418 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CLRN1P58418 AC022137.2-201ENST00000503482 481 ntBASIC13.39□□□□□ -0.27
CLRN1P58418 AC026434.2-201ENST00000506094 1078 ntBASIC13.39□□□□□ -0.27
CLRN1P58418 NEU3-203ENST00000529024 581 ntTSL 3 BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms