Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.24□□□□□ -0.29
SOX2P48431 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.24□□□□□ -0.29
SOX2P48431 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 AC011474.4-201ENST00000623523 2076 ntBASIC13.24□□□□□ -0.29
SOX2P48431 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC13.24□□□□□ -0.29
SOX2P48431 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX2P48431 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.23□□□□□ -0.29
SOX2P48431 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.23□□□□□ -0.29
SOX2P48431 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
SOX2P48431 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
SOX2P48431 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
SOX2P48431 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX2P48431 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX2P48431 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX2P48431 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX2P48431 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX2P48431 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX2P48431 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 CENPM-205ENST00000404067 905 ntTSL 3 BASIC13.23□□□□□ -0.29
SOX2P48431 CENPM-206ENST00000407253 818 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX2P48431 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 PPP6R2P1-201ENST00000450880 1275 ntBASIC13.23□□□□□ -0.29
SOX2P48431 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC13.23□□□□□ -0.29
SOX2P48431 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC13.23□□□□□ -0.29
SOX2P48431 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX2P48431 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 AC010336.2-201ENST00000564226 506 ntBASIC13.23□□□□□ -0.29
SOX2P48431 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC13.23□□□□□ -0.29
SOX2P48431 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX2P48431 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC13.23□□□□□ -0.29
SOX2P48431 TEX28P1-201ENST00000613479 1221 ntBASIC13.23□□□□□ -0.29
SOX2P48431 TEX28P2-201ENST00000617764 1221 ntBASIC13.23□□□□□ -0.29
SOX2P48431 SPDYE12P-201ENST00000618416 771 ntBASIC13.23□□□□□ -0.29
SOX2P48431 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.23□□□□□ -0.29
SOX2P48431 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX2P48431 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX2P48431 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
SOX2P48431 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
SOX2P48431 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.23□□□□□ -0.29
SOX2P48431 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
SOX2P48431 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX2P48431 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX2P48431 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX2P48431 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SOX2P48431 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC13.22□□□□□ -0.29
SOX2P48431 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SOX2P48431 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.22□□□□□ -0.29
SOX2P48431 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX2P48431 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX2P48431 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SOX2P48431 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SOX2P48431 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SOX2P48431 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX2P48431 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX2P48431 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms