Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HADHAP40939 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HADHAP40939 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HADHAP40939 AC018665.1-201ENST00000622927 1362 ntBASIC15.17■□□□□ 0.02
HADHAP40939 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.17■□□□□ 0.02
HADHAP40939 ACTG1P3-201ENST00000431775 1114 ntBASIC15.17■□□□□ 0.02
HADHAP40939 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HADHAP40939 AC244107.1-201ENST00000442033 332 ntBASIC15.17■□□□□ 0.02
HADHAP40939 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.17■□□□□ 0.02
HADHAP40939 RN7SL752P-201ENST00000463779 287 ntBASIC15.17■□□□□ 0.02
HADHAP40939 GIMAP3P-201ENST00000495150 836 ntBASIC15.17■□□□□ 0.02
HADHAP40939 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.17■□□□□ 0.02
HADHAP40939 AP005018.1-201ENST00000525475 301 ntBASIC15.17■□□□□ 0.02
HADHAP40939 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.17■□□□□ 0.02
HADHAP40939 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HADHAP40939 DUX4L47-201ENST00000566374 394 ntBASIC15.17■□□□□ 0.02
HADHAP40939 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.17■□□□□ 0.02
HADHAP40939 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.17■□□□□ 0.02
HADHAP40939 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.17■□□□□ 0.02
HADHAP40939 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.17■□□□□ 0.02
HADHAP40939 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
HADHAP40939 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.17■□□□□ 0.02
HADHAP40939 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HADHAP40939 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
HADHAP40939 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HADHAP40939 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HADHAP40939 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
HADHAP40939 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.17■□□□□ 0.02
HADHAP40939 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
HADHAP40939 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
HADHAP40939 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HADHAP40939 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HADHAP40939 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HADHAP40939 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HADHAP40939 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.16■□□□□ 0.02
HADHAP40939 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
HADHAP40939 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.16■□□□□ 0.02
HADHAP40939 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
HADHAP40939 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.16■□□□□ 0.02
HADHAP40939 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 HSPA7-201ENST00000445535 1927 ntBASIC15.16■□□□□ 0.02
HADHAP40939 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
HADHAP40939 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
HADHAP40939 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.16■□□□□ 0.02
HADHAP40939 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.16■□□□□ 0.02
HADHAP40939 PTP4A1P2-201ENST00000546033 454 ntBASIC15.16■□□□□ 0.02
HADHAP40939 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.16■□□□□ 0.02
HADHAP40939 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.16■□□□□ 0.02
HADHAP40939 AL596325.1-201ENST00000563991 1082 ntBASIC15.16■□□□□ 0.02
HADHAP40939 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.16■□□□□ 0.02
HADHAP40939 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.16■□□□□ 0.02
HADHAP40939 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
HADHAP40939 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC15.16■□□□□ 0.02
HADHAP40939 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.16■□□□□ 0.02
HADHAP40939 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
HADHAP40939 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.16■□□□□ 0.02
HADHAP40939 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.16■□□□□ 0.02
HADHAP40939 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
HADHAP40939 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 KRT8P35-201ENST00000483942 1338 ntBASIC15.16■□□□□ 0.02
HADHAP40939 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HADHAP40939 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HADHAP40939 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HADHAP40939 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HADHAP40939 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.15■□□□□ 0.02
HADHAP40939 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HADHAP40939 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HADHAP40939 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HADHAP40939 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
HADHAP40939 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
HADHAP40939 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HADHAP40939 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HADHAP40939 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.15■□□□□ 0.02
HADHAP40939 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HADHAP40939 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms