Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.73■□□□□ 0.11
BDNFP23560 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
BDNFP23560 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.72■□□□□ 0.11
BDNFP23560 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
BDNFP23560 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.72■□□□□ 0.11
BDNFP23560 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
BDNFP23560 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.72■□□□□ 0.11
BDNFP23560 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
BDNFP23560 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.72■□□□□ 0.11
BDNFP23560 E2F3P2-201ENST00000447755 1422 ntBASIC15.72■□□□□ 0.11
BDNFP23560 AC013726.1-201ENST00000563747 2285 ntBASIC15.72■□□□□ 0.11
BDNFP23560 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
BDNFP23560 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
BDNFP23560 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
BDNFP23560 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 GPAA1P2-201ENST00000417923 928 ntBASIC15.72■□□□□ 0.11
BDNFP23560 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 PTPA-218ENST00000435132 618 ntTSL 2 BASIC15.72■□□□□ 0.11
BDNFP23560 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.72■□□□□ 0.11
BDNFP23560 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.72■□□□□ 0.11
BDNFP23560 AC131206.1-201ENST00000538078 1211 ntBASIC15.72■□□□□ 0.11
BDNFP23560 NOP2-211ENST00000540228 668 ntTSL 2 BASIC15.72■□□□□ 0.11
BDNFP23560 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC15.72■□□□□ 0.11
BDNFP23560 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC15.72■□□□□ 0.11
BDNFP23560 MIR3615-201ENST00000581999 87 ntBASIC15.72■□□□□ 0.11
BDNFP23560 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.72■□□□□ 0.11
BDNFP23560 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 AC007663.3-201ENST00000609632 465 ntBASIC15.72■□□□□ 0.11
BDNFP23560 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 AC007292.2-201ENST00000593524 1812 ntBASIC15.72■□□□□ 0.11
BDNFP23560 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
BDNFP23560 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
BDNFP23560 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
BDNFP23560 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC15.71■□□□□ 0.11
BDNFP23560 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.11
BDNFP23560 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
BDNFP23560 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.71■□□□□ 0.11
BDNFP23560 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 GCOM2-201ENST00000509133 1104 ntBASIC15.71■□□□□ 0.11
BDNFP23560 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15.71■□□□□ 0.11
BDNFP23560 AP001258.2-201ENST00000529891 490 ntBASIC15.71■□□□□ 0.11
BDNFP23560 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.71■□□□□ 0.11
BDNFP23560 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC15.71■□□□□ 0.11
BDNFP23560 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.71■□□□□ 0.11
BDNFP23560 MIR4783-201ENST00000580343 82 ntBASIC15.71■□□□□ 0.11
BDNFP23560 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.71■□□□□ 0.11
BDNFP23560 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.71■□□□□ 0.11
BDNFP23560 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
BDNFP23560 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.71■□□□□ 0.11
BDNFP23560 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
BDNFP23560 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
BDNFP23560 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
BDNFP23560 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
BDNFP23560 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
BDNFP23560 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
BDNFP23560 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
BDNFP23560 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
BDNFP23560 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
BDNFP23560 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
BDNFP23560 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.1
BDNFP23560 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
BDNFP23560 AC006058.4-201ENST00000624016 1670 ntBASIC15.7■□□□□ 0.1
BDNFP23560 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms