Protein–RNA interactions for Protein: O75382

TRIM3, Tripartite motif-containing protein 3, humanhuman

Predicted RBP Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3O75382 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.03□□□□□ -0.16
TRIM3O75382 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
TRIM3O75382 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 AC006504.5-208ENST00000588784 2401 ntBASIC14.03□□□□□ -0.16
TRIM3O75382 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
TRIM3O75382 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.03□□□□□ -0.16
TRIM3O75382 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.03□□□□□ -0.16
TRIM3O75382 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.03□□□□□ -0.16
TRIM3O75382 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.03□□□□□ -0.16
TRIM3O75382 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.03□□□□□ -0.16
TRIM3O75382 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.03□□□□□ -0.16
TRIM3O75382 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
TRIM3O75382 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.03□□□□□ -0.16
TRIM3O75382 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.03□□□□□ -0.16
TRIM3O75382 AL512343.1-201ENST00000605837 169 ntBASIC14.03□□□□□ -0.16
TRIM3O75382 AL022328.1-201ENST00000610050 478 ntBASIC14.03□□□□□ -0.16
TRIM3O75382 AC134312.5-201ENST00000568031 1313 ntBASIC14.03□□□□□ -0.16
TRIM3O75382 AC093525.8-201ENST00000624099 1342 ntBASIC14.03□□□□□ -0.16
TRIM3O75382 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
TRIM3O75382 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
TRIM3O75382 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.03□□□□□ -0.16
TRIM3O75382 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.03□□□□□ -0.16
TRIM3O75382 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.03□□□□□ -0.16
TRIM3O75382 AC010327.5-201ENST00000586923 3061 ntBASIC14.03□□□□□ -0.16
TRIM3O75382 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM3O75382 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
TRIM3O75382 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM3O75382 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM3O75382 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM3O75382 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.02□□□□□ -0.16
TRIM3O75382 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
TRIM3O75382 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM3O75382 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM3O75382 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.02□□□□□ -0.16
TRIM3O75382 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC14.02□□□□□ -0.16
TRIM3O75382 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.02□□□□□ -0.16
TRIM3O75382 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM3O75382 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM3O75382 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM3O75382 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM3O75382 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.02□□□□□ -0.16
TRIM3O75382 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM3O75382 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.02□□□□□ -0.16
TRIM3O75382 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
TRIM3O75382 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM3O75382 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM3O75382 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.02□□□□□ -0.17
TRIM3O75382 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM3O75382 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM3O75382 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.02□□□□□ -0.17
TRIM3O75382 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM3O75382 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
TRIM3O75382 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.02□□□□□ -0.17
TRIM3O75382 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM3O75382 NUS1P3-201ENST00000423502 862 ntBASIC14.02□□□□□ -0.17
TRIM3O75382 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.02□□□□□ -0.17
TRIM3O75382 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.02□□□□□ -0.17
TRIM3O75382 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.02□□□□□ -0.17
TRIM3O75382 KRT43P-201ENST00000434019 910 ntBASIC14.02□□□□□ -0.17
TRIM3O75382 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.02□□□□□ -0.17
TRIM3O75382 AC004066.1-201ENST00000502488 802 ntBASIC14.02□□□□□ -0.17
TRIM3O75382 IGHV3-71-201ENST00000523324 359 ntBASIC14.02□□□□□ -0.17
TRIM3O75382 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.02□□□□□ -0.17
TRIM3O75382 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.02□□□□□ -0.17
TRIM3O75382 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.02□□□□□ -0.17
TRIM3O75382 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.02□□□□□ -0.17
TRIM3O75382 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM3O75382 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.02□□□□□ -0.17
TRIM3O75382 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM3O75382 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.17
TRIM3O75382 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM3O75382 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
TRIM3O75382 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
TRIM3O75382 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM3O75382 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM3O75382 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM3O75382 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM3O75382 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.02□□□□□ -0.17
TRIM3O75382 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
TRIM3O75382 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
TRIM3O75382 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM3O75382 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms