Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 DUX4L27-201ENST00000554796 1261 ntBASIC13.15□□□□□ -0.3
NKX3-1Q99801 RPL28-205ENST00000558131 444 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 AC051619.7-201ENST00000568314 623 ntBASIC13.15□□□□□ -0.3
NKX3-1Q99801 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
NKX3-1Q99801 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC13.15□□□□□ -0.31
NKX3-1Q99801 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC13.15□□□□□ -0.31
NKX3-1Q99801 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.15□□□□□ -0.31
NKX3-1Q99801 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.31
NKX3-1Q99801 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
NKX3-1Q99801 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
NKX3-1Q99801 AC012617.1-204ENST00000586340 2305 ntBASIC13.14□□□□□ -0.31
NKX3-1Q99801 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 AC107890.1-201ENST00000422478 521 ntBASIC13.14□□□□□ -0.31
NKX3-1Q99801 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 SERBP1P3-201ENST00000459980 809 ntBASIC13.14□□□□□ -0.31
NKX3-1Q99801 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 AC069262.1-201ENST00000539058 672 ntBASIC13.14□□□□□ -0.31
NKX3-1Q99801 AC044860.1-202ENST00000559481 777 ntBASIC13.14□□□□□ -0.31
NKX3-1Q99801 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC13.14□□□□□ -0.31
NKX3-1Q99801 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.14□□□□□ -0.31
NKX3-1Q99801 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX3-1Q99801 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX3-1Q99801 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms