Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 STK24P1-201ENST00000455035 1291 ntBASIC12.73□□□□□ -0.37
COL12A1Q99715 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC12.73□□□□□ -0.37
COL12A1Q99715 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC12.73□□□□□ -0.37
COL12A1Q99715 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC12.73□□□□□ -0.37
COL12A1Q99715 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC12.73□□□□□ -0.37
COL12A1Q99715 ST5-261ENST00000626808 1071 ntTSL 5 BASIC12.73□□□□□ -0.37
COL12A1Q99715 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC12.73□□□□□ -0.37
COL12A1Q99715 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC12.73□□□□□ -0.37
COL12A1Q99715 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 FUCA1P1-201ENST00000374476 1351 ntBASIC12.73□□□□□ -0.37
COL12A1Q99715 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
COL12A1Q99715 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC12.73□□□□□ -0.37
COL12A1Q99715 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC12.73□□□□□ -0.37
COL12A1Q99715 AL773545.2-201ENST00000442149 472 ntBASIC12.73□□□□□ -0.37
COL12A1Q99715 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
COL12A1Q99715 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
COL12A1Q99715 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC12.72□□□□□ -0.37
COL12A1Q99715 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC12.72□□□□□ -0.37
COL12A1Q99715 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
COL12A1Q99715 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC12.72□□□□□ -0.37
COL12A1Q99715 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC12.72□□□□□ -0.37
COL12A1Q99715 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
COL12A1Q99715 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 AC087072.1-201ENST00000603727 421 ntBASIC12.72□□□□□ -0.37
COL12A1Q99715 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC12.72□□□□□ -0.37
COL12A1Q99715 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC12.72□□□□□ -0.37
COL12A1Q99715 BX322534.1-201ENST00000635574 241 ntBASIC12.72□□□□□ -0.37
COL12A1Q99715 AC215524.1-201ENST00000635696 241 ntBASIC12.72□□□□□ -0.37
COL12A1Q99715 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC12.72□□□□□ -0.37
COL12A1Q99715 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
COL12A1Q99715 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
COL12A1Q99715 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC12.72□□□□□ -0.37
COL12A1Q99715 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 AL050341.2-201ENST00000567508 1541 ntBASIC12.72□□□□□ -0.37
COL12A1Q99715 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC12.72□□□□□ -0.37
COL12A1Q99715 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC12.72□□□□□ -0.37
COL12A1Q99715 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC12.72□□□□□ -0.37
COL12A1Q99715 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
COL12A1Q99715 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
COL12A1Q99715 PEBP1P3-201ENST00000455475 548 ntBASIC12.72□□□□□ -0.37
COL12A1Q99715 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
COL12A1Q99715 CSTP2-201ENST00000610599 398 ntBASIC12.72□□□□□ -0.37
COL12A1Q99715 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC12.72□□□□□ -0.37
COL12A1Q99715 AC139713.2-207ENST00000641556 1292 ntBASIC12.72□□□□□ -0.37
COL12A1Q99715 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
COL12A1Q99715 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.72□□□□□ -0.37
COL12A1Q99715 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC12.72□□□□□ -0.37
COL12A1Q99715 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.72□□□□□ -0.37
COL12A1Q99715 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC12.72□□□□□ -0.37
COL12A1Q99715 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC12.72□□□□□ -0.37
COL12A1Q99715 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL12A1Q99715 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
COL12A1Q99715 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC12.71□□□□□ -0.37
COL12A1Q99715 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.37
COL12A1Q99715 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC12.71□□□□□ -0.37
COL12A1Q99715 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC12.71□□□□□ -0.37
COL12A1Q99715 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 AC003686.1-201ENST00000550956 1034 ntBASIC12.71□□□□□ -0.37
COL12A1Q99715 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC12.71□□□□□ -0.37
COL12A1Q99715 MIR4254-201ENST00000581063 76 ntBASIC12.71□□□□□ -0.37
COL12A1Q99715 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC12.71□□□□□ -0.37
COL12A1Q99715 AC090616.6-203ENST00000579186 1945 ntBASIC12.71□□□□□ -0.37
COL12A1Q99715 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms