Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AC055811.4-201ENST00000624039 1754 ntBASIC16.1■□□□□ 0.17
LRCH3Q96II8 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.1■□□□□ 0.17
LRCH3Q96II8 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 AP000593.2-201ENST00000542775 1433 ntBASIC16.1■□□□□ 0.17
LRCH3Q96II8 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LRCH3Q96II8 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LRCH3Q96II8 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LRCH3Q96II8 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LRCH3Q96II8 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LRCH3Q96II8 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LRCH3Q96II8 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 AC144831.1-201ENST00000573312 2656 ntBASIC16.09■□□□□ 0.17
LRCH3Q96II8 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LRCH3Q96II8 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LRCH3Q96II8 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LRCH3Q96II8 GOSR1-204ENST00000451249 1231 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 GDNF-207ENST00000515058 764 ntTSL 5 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 NEU3-207ENST00000534628 746 ntTSL 2 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 AL596087.1-201ENST00000400979 1969 ntBASIC16.09■□□□□ 0.17
LRCH3Q96II8 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.09■□□□□ 0.17
LRCH3Q96II8 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LRCH3Q96II8 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LRCH3Q96II8 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
LRCH3Q96II8 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
LRCH3Q96II8 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LRCH3Q96II8 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
LRCH3Q96II8 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LRCH3Q96II8 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
LRCH3Q96II8 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.08■□□□□ 0.17
LRCH3Q96II8 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.08■□□□□ 0.17
LRCH3Q96II8 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.17
LRCH3Q96II8 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LRCH3Q96II8 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LRCH3Q96II8 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LRCH3Q96II8 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LRCH3Q96II8 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LRCH3Q96II8 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LRCH3Q96II8 Z97985.1-201ENST00000332270 946 ntBASIC16.08■□□□□ 0.16
LRCH3Q96II8 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LRCH3Q96II8 MBP-201ENST00000354542 575 ntTSL 2 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 AC010141.1-201ENST00000411585 623 ntBASIC16.08■□□□□ 0.16
LRCH3Q96II8 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 AL603841.1-201ENST00000430516 664 ntBASIC16.08■□□□□ 0.16
LRCH3Q96II8 RN7SL494P-201ENST00000461517 304 ntBASIC16.08■□□□□ 0.16
LRCH3Q96II8 AC004066.1-201ENST00000502488 802 ntBASIC16.08■□□□□ 0.16
LRCH3Q96II8 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LRCH3Q96II8 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LRCH3Q96II8 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.08■□□□□ 0.16
LRCH3Q96II8 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 MBP-238ENST00000580402 915 ntTSL 5 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC16.08■□□□□ 0.16
LRCH3Q96II8 AC108359.1-201ENST00000616451 1211 ntBASIC16.08■□□□□ 0.16
LRCH3Q96II8 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LRCH3Q96II8 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LRCH3Q96II8 DBET-201ENST00000630918 3363 ntBASIC16.08■□□□□ 0.16
LRCH3Q96II8 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LRCH3Q96II8 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LRCH3Q96II8 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
LRCH3Q96II8 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
LRCH3Q96II8 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LRCH3Q96II8 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 AC009093.2-202ENST00000620513 2079 ntBASIC16.07■□□□□ 0.16
LRCH3Q96II8 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms