Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AP001002.3-201ENST00000623482 206 ntBASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AC002472.3-201ENST00000640124 621 ntBASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AC006504.5-208ENST00000588784 2401 ntBASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AL009178.2-201ENST00000597278 2719 ntBASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 VPS18-202ENST00000558474 873 ntTSL 3 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 AC009486.1-201ENST00000569860 813 ntBASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 ZACNP1-201ENST00000612259 710 ntBASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
SHROOM3Q8TF72 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 AP000593.2-201ENST00000542775 1433 ntBASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 CALR4P-201ENST00000431943 946 ntBASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 AC006453.4-201ENST00000636949 1252 ntBASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SHROOM3Q8TF72 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 DUX4L45-201ENST00000566406 1057 ntBASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 AC009542.2-202ENST00000619004 1067 ntBASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms