Protein–RNA interactions for Protein: Q06643

LTB, Lymphotoxin-beta, humanhuman

Predictions only

Length 244 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LTBQ06643 MIR6869-201ENST00000619434 62 ntBASIC13.72□□□□□ -0.21
LTBQ06643 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.72□□□□□ -0.21
LTBQ06643 PRSS30P-206ENST00000641773 873 ntBASIC13.72□□□□□ -0.21
LTBQ06643 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LTBQ06643 AC067750.1-201ENST00000608826 6545 ntBASIC13.72□□□□□ -0.21
LTBQ06643 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LTBQ06643 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
LTBQ06643 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC13.72□□□□□ -0.21
LTBQ06643 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LTBQ06643 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
LTBQ06643 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LTBQ06643 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.72□□□□□ -0.21
LTBQ06643 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LTBQ06643 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LTBQ06643 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LTBQ06643 KRT8P22-201ENST00000562317 1415 ntBASIC13.72□□□□□ -0.21
LTBQ06643 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LTBQ06643 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LTBQ06643 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
LTBQ06643 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LTBQ06643 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LTBQ06643 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.72□□□□□ -0.21
LTBQ06643 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LTBQ06643 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LTBQ06643 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.72□□□□□ -0.21
LTBQ06643 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.72□□□□□ -0.21
LTBQ06643 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LTBQ06643 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LTBQ06643 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
LTBQ06643 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LTBQ06643 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LTBQ06643 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
LTBQ06643 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LTBQ06643 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LTBQ06643 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LTBQ06643 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.71□□□□□ -0.21
LTBQ06643 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LTBQ06643 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.71□□□□□ -0.21
LTBQ06643 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LTBQ06643 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LTBQ06643 AL645937.2-201ENST00000396808 931 ntBASIC13.71□□□□□ -0.21
LTBQ06643 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC13.71□□□□□ -0.21
LTBQ06643 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.71□□□□□ -0.21
LTBQ06643 HNRNPA1P13-201ENST00000510646 963 ntBASIC13.71□□□□□ -0.21
LTBQ06643 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC13.71□□□□□ -0.21
LTBQ06643 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC13.71□□□□□ -0.21
LTBQ06643 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.71□□□□□ -0.21
LTBQ06643 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.71□□□□□ -0.21
LTBQ06643 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.71□□□□□ -0.21
LTBQ06643 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.71□□□□□ -0.21
LTBQ06643 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.71□□□□□ -0.21
LTBQ06643 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC13.71□□□□□ -0.21
LTBQ06643 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LTBQ06643 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.71□□□□□ -0.21
LTBQ06643 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
LTBQ06643 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LTBQ06643 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LTBQ06643 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.71□□□□□ -0.21
LTBQ06643 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
LTBQ06643 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.71□□□□□ -0.21
LTBQ06643 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LTBQ06643 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LTBQ06643 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
LTBQ06643 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.71□□□□□ -0.22
LTBQ06643 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
LTBQ06643 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
LTBQ06643 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
LTBQ06643 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
LTBQ06643 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LTBQ06643 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
LTBQ06643 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
LTBQ06643 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC13.71□□□□□ -0.22
LTBQ06643 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.7□□□□□ -0.22
LTBQ06643 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.7□□□□□ -0.22
LTBQ06643 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LTBQ06643 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LTBQ06643 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LTBQ06643 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LTBQ06643 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
LTBQ06643 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LTBQ06643 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LTBQ06643 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.7□□□□□ -0.22
LTBQ06643 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
LTBQ06643 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.7□□□□□ -0.22
LTBQ06643 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.7□□□□□ -0.22
LTBQ06643 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LTBQ06643 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LTBQ06643 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LTBQ06643 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
LTBQ06643 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
LTBQ06643 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LTBQ06643 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.7□□□□□ -0.22
LTBQ06643 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
LTBQ06643 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.7□□□□□ -0.22
LTBQ06643 C1QBPP1-201ENST00000400117 770 ntBASIC13.7□□□□□ -0.22
LTBQ06643 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.7□□□□□ -0.22
LTBQ06643 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LTBQ06643 AL442647.2-201ENST00000429864 857 ntBASIC13.7□□□□□ -0.22
LTBQ06643 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LTBQ06643 AC104989.1-201ENST00000519711 778 ntBASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms