Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HMGCS2P54868 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGCS2P54868 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGCS2P54868 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HMGCS2P54868 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HMGCS2P54868 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGCS2P54868 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGCS2P54868 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGCS2P54868 AC011270.2-201ENST00000624293 2550 ntBASIC17.09■□□□□ 0.33
HMGCS2P54868 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGCS2P54868 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGCS2P54868 KRT18P36-201ENST00000411618 1276 ntBASIC17.09■□□□□ 0.33
HMGCS2P54868 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC17.09■□□□□ 0.33
HMGCS2P54868 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.09■□□□□ 0.33
HMGCS2P54868 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
HMGCS2P54868 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGCS2P54868 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGCS2P54868 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGCS2P54868 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGCS2P54868 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.09■□□□□ 0.33
HMGCS2P54868 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC17.09■□□□□ 0.33
HMGCS2P54868 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC17.09■□□□□ 0.33
HMGCS2P54868 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC17.09■□□□□ 0.33
HMGCS2P54868 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
HMGCS2P54868 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGCS2P54868 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGCS2P54868 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGCS2P54868 TMBIM7P-203ENST00000641617 1718 ntBASIC17.09■□□□□ 0.33
HMGCS2P54868 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGCS2P54868 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGCS2P54868 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HMGCS2P54868 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HMGCS2P54868 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGCS2P54868 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGCS2P54868 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGCS2P54868 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGCS2P54868 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGCS2P54868 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HMGCS2P54868 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGCS2P54868 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.08■□□□□ 0.33
HMGCS2P54868 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGCS2P54868 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HMGCS2P54868 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HMGCS2P54868 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGCS2P54868 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGCS2P54868 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGCS2P54868 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGCS2P54868 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HMGCS2P54868 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGCS2P54868 AL583805.1-201ENST00000391389 531 ntBASIC17.08■□□□□ 0.32
HMGCS2P54868 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGCS2P54868 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC17.08■□□□□ 0.32
HMGCS2P54868 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGCS2P54868 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGCS2P54868 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGCS2P54868 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC17.08■□□□□ 0.32
HMGCS2P54868 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC17.08■□□□□ 0.32
HMGCS2P54868 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HMGCS2P54868 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HMGCS2P54868 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC17.08■□□□□ 0.32
HMGCS2P54868 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGCS2P54868 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGCS2P54868 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGCS2P54868 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
HMGCS2P54868 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGCS2P54868 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGCS2P54868 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGCS2P54868 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
HMGCS2P54868 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 PAUPAR-201ENST00000630360 2965 ntBASIC17.07■□□□□ 0.32
HMGCS2P54868 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
HMGCS2P54868 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGCS2P54868 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGCS2P54868 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGCS2P54868 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HMGCS2P54868 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGCS2P54868 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGCS2P54868 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 MBP-201ENST00000354542 575 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGCS2P54868 AL512430.1-201ENST00000392575 860 ntBASIC17.07■□□□□ 0.32
HMGCS2P54868 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.07■□□□□ 0.32
HMGCS2P54868 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC17.07■□□□□ 0.32
HMGCS2P54868 AL592076.1-201ENST00000424448 303 ntBASIC17.07■□□□□ 0.32
HMGCS2P54868 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC17.07■□□□□ 0.32
HMGCS2P54868 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGCS2P54868 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 AC007881.3-201ENST00000608897 607 ntBASIC17.07■□□□□ 0.32
HMGCS2P54868 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC17.07■□□□□ 0.32
HMGCS2P54868 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms