Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC007952.5-201ENST00000572818 1486 ntBASIC17.53■□□□□ 0.4
BRCA1P38398 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
BRCA1P38398 PCDH8P1-201ENST00000428983 2773 ntBASIC17.53■□□□□ 0.4
BRCA1P38398 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BRCA1P38398 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
BRCA1P38398 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BRCA1P38398 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.53■□□□□ 0.4
BRCA1P38398 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
BRCA1P38398 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.52■□□□□ 0.4
BRCA1P38398 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
BRCA1P38398 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.52■□□□□ 0.4
BRCA1P38398 FAU-201ENST00000279259 461 ntTSL 2 BASIC17.52■□□□□ 0.4
BRCA1P38398 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
BRCA1P38398 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
BRCA1P38398 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
BRCA1P38398 HLA-DMA-202ENST00000395303 1007 ntBASIC17.52■□□□□ 0.4
BRCA1P38398 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
BRCA1P38398 FDPSP7-201ENST00000429043 1054 ntBASIC17.52■□□□□ 0.4
BRCA1P38398 ASS1P2-201ENST00000439895 1223 ntBASIC17.52■□□□□ 0.4
BRCA1P38398 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC17.52■□□□□ 0.4
BRCA1P38398 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
BRCA1P38398 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
BRCA1P38398 AL353622.2-201ENST00000605846 425 ntBASIC17.52■□□□□ 0.4
BRCA1P38398 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC17.52■□□□□ 0.4
BRCA1P38398 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC17.52■□□□□ 0.4
BRCA1P38398 AC010531.8-201ENST00000623341 685 ntBASIC17.52■□□□□ 0.4
BRCA1P38398 AL357143.1-203ENST00000639750 881 ntBASIC17.52■□□□□ 0.4
BRCA1P38398 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
BRCA1P38398 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.52■□□□□ 0.4
BRCA1P38398 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
BRCA1P38398 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
BRCA1P38398 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
BRCA1P38398 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.52■□□□□ 0.4
BRCA1P38398 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
BRCA1P38398 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
BRCA1P38398 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.52■□□□□ 0.4
BRCA1P38398 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
BRCA1P38398 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
BRCA1P38398 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
BRCA1P38398 KRT8P30-201ENST00000432100 650 ntBASIC17.52■□□□□ 0.39
BRCA1P38398 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC17.52■□□□□ 0.39
BRCA1P38398 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
BRCA1P38398 AC079414.2-201ENST00000567157 1104 ntBASIC17.52■□□□□ 0.39
BRCA1P38398 NEK4P3-201ENST00000604859 544 ntBASIC17.52■□□□□ 0.39
BRCA1P38398 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
BRCA1P38398 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC17.52■□□□□ 0.39
BRCA1P38398 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
BRCA1P38398 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
BRCA1P38398 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
BRCA1P38398 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
BRCA1P38398 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC17.52■□□□□ 0.39
BRCA1P38398 AD000864.1-201ENST00000624076 2295 ntBASIC17.52■□□□□ 0.39
BRCA1P38398 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
BRCA1P38398 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
BRCA1P38398 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
BRCA1P38398 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC17.51■□□□□ 0.39
BRCA1P38398 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17.51■□□□□ 0.39
BRCA1P38398 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BRCA1P38398 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
BRCA1P38398 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BRCA1P38398 AC008536.3-201ENST00000623282 1599 ntBASIC17.51■□□□□ 0.39
BRCA1P38398 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
BRCA1P38398 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
BRCA1P38398 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC17.51■□□□□ 0.39
BRCA1P38398 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
BRCA1P38398 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BRCA1P38398 LINP1-201ENST00000417112 917 ntTSL 2 BASIC17.51■□□□□ 0.39
BRCA1P38398 FAM21EP-201ENST00000417804 985 ntBASIC17.51■□□□□ 0.39
BRCA1P38398 GALP-202ENST00000440823 889 ntTSL 5 BASIC17.51■□□□□ 0.39
BRCA1P38398 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC17.51■□□□□ 0.39
BRCA1P38398 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
BRCA1P38398 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BRCA1P38398 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC17.51■□□□□ 0.39
BRCA1P38398 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC17.51■□□□□ 0.39
BRCA1P38398 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
BRCA1P38398 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC17.51■□□□□ 0.39
BRCA1P38398 PSME2-217ENST00000615264 874 ntTSL 5 BASIC17.51■□□□□ 0.39
BRCA1P38398 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC17.51■□□□□ 0.39
BRCA1P38398 PSME2-218ENST00000630027 185 ntTSL 3 BASIC17.51■□□□□ 0.39
BRCA1P38398 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.51■□□□□ 0.39
BRCA1P38398 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
BRCA1P38398 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
BRCA1P38398 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
BRCA1P38398 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
BRCA1P38398 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.51■□□□□ 0.39
BRCA1P38398 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
BRCA1P38398 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.51■□□□□ 0.39
BRCA1P38398 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
BRCA1P38398 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BRCA1P38398 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BRCA1P38398 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BRCA1P38398 KRT8P18-201ENST00000413425 1445 ntBASIC17.5■□□□□ 0.39
BRCA1P38398 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC17.5■□□□□ 0.39
BRCA1P38398 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
BRCA1P38398 BAX-205ENST00000391871 687 ntTSL 5 BASIC17.5■□□□□ 0.39
BRCA1P38398 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC17.5■□□□□ 0.39
BRCA1P38398 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC17.5■□□□□ 0.39
BRCA1P38398 PRSS3P1-201ENST00000503996 742 ntBASIC17.5■□□□□ 0.39
BRCA1P38398 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC17.5■□□□□ 0.39
BRCA1P38398 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms