Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC19.51■□□□□ 0.71
HOXC9P31274 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC19.51■□□□□ 0.71
HOXC9P31274 TPM1-223ENST00000560445 485 ntTSL 3 BASIC19.51■□□□□ 0.71
HOXC9P31274 AC093752.3-201ENST00000567343 901 ntBASIC19.51■□□□□ 0.71
HOXC9P31274 AC009560.1-201ENST00000620208 434 ntBASIC19.51■□□□□ 0.71
HOXC9P31274 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC19.51■□□□□ 0.71
HOXC9P31274 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC19.51■□□□□ 0.71
HOXC9P31274 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC19.51■□□□□ 0.71
HOXC9P31274 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC19.51■□□□□ 0.71
HOXC9P31274 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
HOXC9P31274 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
HOXC9P31274 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
HOXC9P31274 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
HOXC9P31274 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC19.5■□□□□ 0.71
HOXC9P31274 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC19.5■□□□□ 0.71
HOXC9P31274 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
HOXC9P31274 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 LINC00554-201ENST00000564841 3011 ntBASIC19.5■□□□□ 0.71
HOXC9P31274 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
HOXC9P31274 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 AL807761.2-201ENST00000422849 729 ntBASIC19.5■□□□□ 0.71
HOXC9P31274 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC19.5■□□□□ 0.71
HOXC9P31274 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC19.5■□□□□ 0.71
HOXC9P31274 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC19.5■□□□□ 0.71
HOXC9P31274 AL031713.1-201ENST00000564813 661 ntBASIC19.5■□□□□ 0.71
HOXC9P31274 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC19.5■□□□□ 0.71
HOXC9P31274 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC19.5■□□□□ 0.71
HOXC9P31274 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
HOXC9P31274 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
HOXC9P31274 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
HOXC9P31274 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
HOXC9P31274 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC9P31274 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC19.5■□□□□ 0.71
HOXC9P31274 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC19.49■□□□□ 0.71
HOXC9P31274 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC19.49■□□□□ 0.71
HOXC9P31274 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
HOXC9P31274 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC19.49■□□□□ 0.71
HOXC9P31274 DUX4L50-201ENST00000455245 715 ntBASIC19.49■□□□□ 0.71
HOXC9P31274 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC19.49■□□□□ 0.71
HOXC9P31274 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC19.49■□□□□ 0.71
HOXC9P31274 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC19.49■□□□□ 0.71
HOXC9P31274 AC124068.2-201ENST00000569473 1109 ntBASIC19.49■□□□□ 0.71
HOXC9P31274 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC19.49■□□□□ 0.71
HOXC9P31274 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC19.49■□□□□ 0.71
HOXC9P31274 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC19.49■□□□□ 0.71
HOXC9P31274 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC19.49■□□□□ 0.71
HOXC9P31274 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
HOXC9P31274 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC9P31274 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HOXC9P31274 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
HOXC9P31274 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
HOXC9P31274 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
HOXC9P31274 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 PARN-202ENST00000420015 2360 ntTSL 2 BASIC19.48■□□□□ 0.71
HOXC9P31274 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC19.48■□□□□ 0.71
HOXC9P31274 AC008741.2-201ENST00000612792 3115 ntBASIC19.48■□□□□ 0.71
HOXC9P31274 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC19.48■□□□□ 0.71
HOXC9P31274 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 GAS5-209ENST00000430245 723 ntTSL 3 BASIC19.48■□□□□ 0.71
HOXC9P31274 FTH1P22-201ENST00000456305 520 ntBASIC19.48■□□□□ 0.71
HOXC9P31274 AC114947.1-202ENST00000514136 344 ntBASIC19.48■□□□□ 0.71
HOXC9P31274 AC007326.1-201ENST00000604539 458 ntBASIC19.48■□□□□ 0.71
HOXC9P31274 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms