Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.76□□□□□ -0.21
MSX1P28360 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
MSX1P28360 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC13.76□□□□□ -0.21
MSX1P28360 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.76□□□□□ -0.21
MSX1P28360 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
MSX1P28360 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.75□□□□□ -0.21
MSX1P28360 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.75□□□□□ -0.21
MSX1P28360 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
MSX1P28360 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
MSX1P28360 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
MSX1P28360 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 TPM3P8-201ENST00000330554 643 ntBASIC13.75□□□□□ -0.21
MSX1P28360 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX1P28360 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX1P28360 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 TLE1P1-201ENST00000422965 589 ntBASIC13.75□□□□□ -0.21
MSX1P28360 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC13.75□□□□□ -0.21
MSX1P28360 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.75□□□□□ -0.21
MSX1P28360 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC13.75□□□□□ -0.21
MSX1P28360 AC026434.2-201ENST00000506094 1078 ntBASIC13.75□□□□□ -0.21
MSX1P28360 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX1P28360 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX1P28360 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
MSX1P28360 EMC4-209ENST00000559421 497 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX1P28360 IGHV3OR16-16-201ENST00000563644 343 ntBASIC13.75□□□□□ -0.21
MSX1P28360 DUX4L45-201ENST00000566406 1057 ntBASIC13.75□□□□□ -0.21
MSX1P28360 AC009542.2-202ENST00000619004 1067 ntBASIC13.75□□□□□ -0.21
MSX1P28360 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13.75□□□□□ -0.21
MSX1P28360 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 LINC01101-201ENST00000622953 1884 ntBASIC13.75□□□□□ -0.21
MSX1P28360 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX1P28360 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX1P28360 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX1P28360 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX1P28360 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX1P28360 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.74□□□□□ -0.21
MSX1P28360 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX1P28360 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
MSX1P28360 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
MSX1P28360 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.74□□□□□ -0.21
MSX1P28360 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
MSX1P28360 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX1P28360 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
MSX1P28360 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
MSX1P28360 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 MIR1247-201ENST00000408206 136 ntBASIC13.74□□□□□ -0.21
MSX1P28360 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.74□□□□□ -0.21
MSX1P28360 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.74□□□□□ -0.21
MSX1P28360 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX1P28360 CD8B2-202ENST00000417670 633 ntBASIC13.74□□□□□ -0.21
MSX1P28360 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX1P28360 AC026954.1-201ENST00000429771 1293 ntBASIC13.74□□□□□ -0.21
MSX1P28360 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX1P28360 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 HMGB3P14-201ENST00000494195 599 ntBASIC13.74□□□□□ -0.21
MSX1P28360 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC13.74□□□□□ -0.21
MSX1P28360 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.74□□□□□ -0.21
MSX1P28360 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.74□□□□□ -0.21
MSX1P28360 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms