Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.75■□□□□ 0.11
BDNFP23560 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
BDNFP23560 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.75■□□□□ 0.11
BDNFP23560 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC15.75■□□□□ 0.11
BDNFP23560 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
BDNFP23560 AC020907.1-201ENST00000616460 1350 ntBASIC15.75■□□□□ 0.11
BDNFP23560 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 AL122018.1-201ENST00000446607 2310 ntBASIC15.74■□□□□ 0.11
BDNFP23560 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.74■□□□□ 0.11
BDNFP23560 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
BDNFP23560 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 LINC01101-201ENST00000622953 1884 ntBASIC15.74■□□□□ 0.11
BDNFP23560 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
BDNFP23560 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
BDNFP23560 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15.74■□□□□ 0.11
BDNFP23560 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 AL354877.1-201ENST00000424412 413 ntBASIC15.74■□□□□ 0.11
BDNFP23560 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.74■□□□□ 0.11
BDNFP23560 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC15.74■□□□□ 0.11
BDNFP23560 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC15.74■□□□□ 0.11
BDNFP23560 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.74■□□□□ 0.11
BDNFP23560 AC005730.2-201ENST00000564549 1184 ntBASIC15.74■□□□□ 0.11
BDNFP23560 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.74■□□□□ 0.11
BDNFP23560 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.74■□□□□ 0.11
BDNFP23560 AC244093.1-201ENST00000610837 814 ntBASIC15.74■□□□□ 0.11
BDNFP23560 MIR6787-201ENST00000616675 61 ntBASIC15.74■□□□□ 0.11
BDNFP23560 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
BDNFP23560 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.74■□□□□ 0.11
BDNFP23560 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.74■□□□□ 0.11
BDNFP23560 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.74■□□□□ 0.11
BDNFP23560 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
BDNFP23560 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
BDNFP23560 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
BDNFP23560 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.73■□□□□ 0.11
BDNFP23560 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.73■□□□□ 0.11
BDNFP23560 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
BDNFP23560 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
BDNFP23560 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 MIR1247-201ENST00000408206 136 ntBASIC15.73■□□□□ 0.11
BDNFP23560 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 POM121L10P-201ENST00000436994 1285 ntBASIC15.73■□□□□ 0.11
BDNFP23560 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC15.73■□□□□ 0.11
BDNFP23560 AC022494.1-201ENST00000466044 728 ntBASIC15.73■□□□□ 0.11
BDNFP23560 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
BDNFP23560 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC15.73■□□□□ 0.11
BDNFP23560 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC15.73■□□□□ 0.11
BDNFP23560 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.73■□□□□ 0.11
BDNFP23560 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.73■□□□□ 0.11
BDNFP23560 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
BDNFP23560 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.73■□□□□ 0.11
BDNFP23560 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.73■□□□□ 0.11
BDNFP23560 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 SHC1P1-201ENST00000425230 1745 ntBASIC15.73■□□□□ 0.11
BDNFP23560 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.73■□□□□ 0.11
BDNFP23560 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.73■□□□□ 0.11
BDNFP23560 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
BDNFP23560 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
BDNFP23560 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms