Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 AL365209.1-201ENST00000624418 6473 ntBASIC14.83□□□□□ -0.04
COL6A2P12110 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
COL6A2P12110 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
COL6A2P12110 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A2P12110 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
COL6A2P12110 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A2P12110 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A2P12110 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
COL6A2P12110 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
COL6A2P12110 INTS4P2-202ENST00000614726 2019 ntBASIC14.82□□□□□ -0.04
COL6A2P12110 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.82□□□□□ -0.04
COL6A2P12110 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.82□□□□□ -0.04
COL6A2P12110 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A2P12110 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
COL6A2P12110 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.82□□□□□ -0.04
COL6A2P12110 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.82□□□□□ -0.04
COL6A2P12110 AC104794.3-201ENST00000566840 1248 ntBASIC14.82□□□□□ -0.04
COL6A2P12110 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.82□□□□□ -0.04
COL6A2P12110 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A2P12110 AL390955.2-201ENST00000603032 514 ntBASIC14.82□□□□□ -0.04
COL6A2P12110 MIR6074-201ENST00000612054 107 ntBASIC14.82□□□□□ -0.04
COL6A2P12110 AL390754.1-201ENST00000619088 582 ntBASIC14.82□□□□□ -0.04
COL6A2P12110 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
COL6A2P12110 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
COL6A2P12110 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A2P12110 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.82□□□□□ -0.04
COL6A2P12110 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A2P12110 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
COL6A2P12110 INE2-201ENST00000630399 1874 ntBASIC14.82□□□□□ -0.04
COL6A2P12110 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 DGCR9-201ENST00000609630 2415 ntBASIC14.82□□□□□ -0.04
COL6A2P12110 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.82□□□□□ -0.04
COL6A2P12110 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A2P12110 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A2P12110 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
COL6A2P12110 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.82□□□□□ -0.04
COL6A2P12110 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A2P12110 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
COL6A2P12110 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A2P12110 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
COL6A2P12110 AC011474.4-201ENST00000623523 2076 ntBASIC14.81□□□□□ -0.04
COL6A2P12110 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A2P12110 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
COL6A2P12110 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A2P12110 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A2P12110 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A2P12110 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A2P12110 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.81□□□□□ -0.04
COL6A2P12110 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
COL6A2P12110 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A2P12110 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
COL6A2P12110 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A2P12110 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A2P12110 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A2P12110 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A2P12110 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
COL6A2P12110 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
COL6A2P12110 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.81□□□□□ -0.04
COL6A2P12110 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A2P12110 AC007969.1-201ENST00000433675 447 ntBASIC14.81□□□□□ -0.04
COL6A2P12110 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A2P12110 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A2P12110 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A2P12110 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.81□□□□□ -0.04
COL6A2P12110 GIMAP3P-201ENST00000495150 836 ntBASIC14.81□□□□□ -0.04
COL6A2P12110 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.81□□□□□ -0.04
COL6A2P12110 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
COL6A2P12110 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.81□□□□□ -0.04
COL6A2P12110 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A2P12110 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A2P12110 AC099568.2-201ENST00000609194 695 ntBASIC14.81□□□□□ -0.04
COL6A2P12110 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.81□□□□□ -0.04
COL6A2P12110 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.81□□□□□ -0.04
COL6A2P12110 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.81□□□□□ -0.04
COL6A2P12110 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms