Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MBD4O95243 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MBD4O95243 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC17.78■□□□□ 0.44
MBD4O95243 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.78■□□□□ 0.44
MBD4O95243 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MBD4O95243 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MBD4O95243 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
MBD4O95243 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
MBD4O95243 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
MBD4O95243 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MBD4O95243 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MBD4O95243 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC17.77■□□□□ 0.44
MBD4O95243 CICP14-201ENST00000629111 2732 ntBASIC17.77■□□□□ 0.44
MBD4O95243 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC17.77■□□□□ 0.44
MBD4O95243 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MBD4O95243 AK6-201ENST00000380818 1183 ntTSL 2 BASIC17.77■□□□□ 0.44
MBD4O95243 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MBD4O95243 PUDPP3-201ENST00000445368 636 ntBASIC17.77■□□□□ 0.44
MBD4O95243 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.77■□□□□ 0.44
MBD4O95243 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.77■□□□□ 0.44
MBD4O95243 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC17.77■□□□□ 0.44
MBD4O95243 DUX4L46-201ENST00000566845 751 ntBASIC17.77■□□□□ 0.44
MBD4O95243 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.77■□□□□ 0.44
MBD4O95243 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC17.77■□□□□ 0.44
MBD4O95243 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
MBD4O95243 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MBD4O95243 AL022328.3-201ENST00000607943 679 ntBASIC17.77■□□□□ 0.44
MBD4O95243 AL162426.1-201ENST00000624141 743 ntBASIC17.77■□□□□ 0.44
MBD4O95243 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MBD4O95243 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MBD4O95243 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MBD4O95243 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.77■□□□□ 0.44
MBD4O95243 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MBD4O95243 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MBD4O95243 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MBD4O95243 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
MBD4O95243 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MBD4O95243 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
MBD4O95243 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MBD4O95243 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
MBD4O95243 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.76■□□□□ 0.43
MBD4O95243 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC17.76■□□□□ 0.43
MBD4O95243 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
MBD4O95243 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
MBD4O95243 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
MBD4O95243 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
MBD4O95243 SMS-201ENST00000379404 1174 ntTSL 3 BASIC17.76■□□□□ 0.43
MBD4O95243 MIR1247-201ENST00000408206 136 ntBASIC17.76■□□□□ 0.43
MBD4O95243 PTPA-218ENST00000435132 618 ntTSL 2 BASIC17.76■□□□□ 0.43
MBD4O95243 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC17.76■□□□□ 0.43
MBD4O95243 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.76■□□□□ 0.43
MBD4O95243 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC17.76■□□□□ 0.43
MBD4O95243 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC17.76■□□□□ 0.43
MBD4O95243 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC17.76■□□□□ 0.43
MBD4O95243 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.76■□□□□ 0.43
MBD4O95243 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.76■□□□□ 0.43
MBD4O95243 AC132192.2-201ENST00000596206 1147 ntBASIC17.76■□□□□ 0.43
MBD4O95243 AC007663.3-201ENST00000609632 465 ntBASIC17.76■□□□□ 0.43
MBD4O95243 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.76■□□□□ 0.43
MBD4O95243 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC17.76■□□□□ 0.43
MBD4O95243 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 AC092135.3-201ENST00000624151 1846 ntBASIC17.76■□□□□ 0.43
MBD4O95243 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.76■□□□□ 0.43
MBD4O95243 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.76■□□□□ 0.43
MBD4O95243 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 AC020907.1-201ENST00000616460 1350 ntBASIC17.76■□□□□ 0.43
MBD4O95243 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
MBD4O95243 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MBD4O95243 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.75■□□□□ 0.43
MBD4O95243 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MBD4O95243 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MBD4O95243 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
MBD4O95243 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.75■□□□□ 0.43
MBD4O95243 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MBD4O95243 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
MBD4O95243 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MBD4O95243 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MBD4O95243 MRPL37P1-201ENST00000592451 1337 ntBASIC17.75■□□□□ 0.43
MBD4O95243 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MBD4O95243 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MBD4O95243 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
MBD4O95243 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MBD4O95243 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
MBD4O95243 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MBD4O95243 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MBD4O95243 CICP12-201ENST00000455801 843 ntBASIC17.75■□□□□ 0.43
MBD4O95243 ATP6V0CP2-201ENST00000469409 207 ntBASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms