Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SHOX2O60902 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC14.98□□□□□ -0.01
SHOX2O60902 HIST3H2BA-201ENST00000436555 524 ntBASIC14.98□□□□□ -0.01
SHOX2O60902 AC009947.1-201ENST00000444350 727 ntBASIC14.98□□□□□ -0.01
SHOX2O60902 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC14.98□□□□□ -0.01
SHOX2O60902 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.98□□□□□ -0.01
SHOX2O60902 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.98□□□□□ -0.01
SHOX2O60902 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 UNC93B6-202ENST00000528242 690 ntBASIC14.98□□□□□ -0.01
SHOX2O60902 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC14.98□□□□□ -0.01
SHOX2O60902 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.98□□□□□ -0.01
SHOX2O60902 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC14.98□□□□□ -0.01
SHOX2O60902 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.98□□□□□ -0.01
SHOX2O60902 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
SHOX2O60902 IRF5-214ENST00000613821 595 ntTSL 5 BASIC14.98□□□□□ -0.01
SHOX2O60902 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
SHOX2O60902 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC14.98□□□□□ -0.01
SHOX2O60902 AC116407.3-201ENST00000623905 1129 ntBASIC14.98□□□□□ -0.01
SHOX2O60902 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC14.98□□□□□ -0.01
SHOX2O60902 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
SHOX2O60902 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC14.98□□□□□ -0.01
SHOX2O60902 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
SHOX2O60902 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 PID1-202ENST00000392054 2745 ntTSL 2 BASIC14.98□□□□□ -0.01
SHOX2O60902 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.98□□□□□ -0.01
SHOX2O60902 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC14.98□□□□□ -0.01
SHOX2O60902 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
SHOX2O60902 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SHOX2O60902 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.97□□□□□ -0.01
SHOX2O60902 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.97□□□□□ -0.01
SHOX2O60902 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 BIRC5-201ENST00000301633 2711 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
SHOX2O60902 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC14.97□□□□□ -0.01
SHOX2O60902 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
SHOX2O60902 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.97□□□□□ -0.01
SHOX2O60902 CRYGEP-201ENST00000412192 528 ntBASIC14.97□□□□□ -0.01
SHOX2O60902 AL031284.1-201ENST00000419297 478 ntBASIC14.97□□□□□ -0.01
SHOX2O60902 RHOQP3-201ENST00000437982 621 ntBASIC14.97□□□□□ -0.01
SHOX2O60902 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.97□□□□□ -0.01
SHOX2O60902 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC14.97□□□□□ -0.01
SHOX2O60902 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC14.97□□□□□ -0.01
SHOX2O60902 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.97□□□□□ -0.01
SHOX2O60902 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.97□□□□□ -0.01
SHOX2O60902 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.97□□□□□ -0.01
SHOX2O60902 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
SHOX2O60902 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC14.97□□□□□ -0.01
SHOX2O60902 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.97□□□□□ -0.01
SHOX2O60902 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.97□□□□□ -0.01
SHOX2O60902 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHOX2O60902 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SHOX2O60902 MPZL2-201ENST00000278937 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHOX2O60902 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC14.96□□□□□ -0.01
SHOX2O60902 DDC-214ENST00000622873 1839 ntTSL 3 BASIC14.96□□□□□ -0.01
SHOX2O60902 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
SHOX2O60902 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.96□□□□□ -0.01
SHOX2O60902 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC14.96□□□□□ -0.01
SHOX2O60902 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHOX2O60902 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.96□□□□□ -0.01
SHOX2O60902 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHOX2O60902 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms