Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
COL4A3BPQ9Y5P4 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A3BPQ9Y5P4 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.77■□□□□ 0.27
COL4A3BPQ9Y5P4 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A3BPQ9Y5P4 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.77■□□□□ 0.27
COL4A3BPQ9Y5P4 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A3BPQ9Y5P4 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 AC245100.3-201ENST00000441281 285 ntBASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 AL355994.2-201ENST00000447882 704 ntBASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 AC092658.1-201ENST00000505836 891 ntBASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 AC026434.2-201ENST00000506094 1078 ntBASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 MIR6799-201ENST00000620297 69 ntBASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 AC023090.2-201ENST00000625182 2110 ntBASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A3BPQ9Y5P4 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 AL354989.2-201ENST00000435838 1540 ntBASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 APOC3-202ENST00000375345 604 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 AC009542.2-202ENST00000619004 1067 ntBASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 AL009178.2-201ENST00000597278 2719 ntBASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 AC023908.3-201ENST00000564211 3047 ntBASIC16.75■□□□□ 0.27
COL4A3BPQ9Y5P4 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 AL161772.1-201ENST00000610494 4412 ntBASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A3BPQ9Y5P4 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms