Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 SPDYE17-201ENST00000412399 783 ntBASIC14.21□□□□□ -0.13
AP4S1Q9Y587 UPK3BP1-201ENST00000428678 509 ntBASIC14.21□□□□□ -0.13
AP4S1Q9Y587 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 IGHV3-22-201ENST00000520721 359 ntBASIC14.21□□□□□ -0.13
AP4S1Q9Y587 FAM86C2P-203ENST00000528684 1004 ntBASIC14.21□□□□□ -0.13
AP4S1Q9Y587 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
AP4S1Q9Y587 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
AP4S1Q9Y587 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
AP4S1Q9Y587 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
AP4S1Q9Y587 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
AP4S1Q9Y587 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
AP4S1Q9Y587 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
AP4S1Q9Y587 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
AP4S1Q9Y587 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
AP4S1Q9Y587 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 PTMS-202ENST00000389462 773 ntTSL 2 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 AC074338.1-201ENST00000416825 156 ntBASIC14.2□□□□□ -0.14
AP4S1Q9Y587 AL031284.1-201ENST00000419297 478 ntBASIC14.2□□□□□ -0.14
AP4S1Q9Y587 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 RN7SL589P-201ENST00000481268 310 ntBASIC14.2□□□□□ -0.14
AP4S1Q9Y587 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 UNC93B7-201ENST00000509439 705 ntBASIC14.2□□□□□ -0.14
AP4S1Q9Y587 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 SAMD11P1-201ENST00000571429 661 ntBASIC14.2□□□□□ -0.14
AP4S1Q9Y587 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 AC064836.3-201ENST00000607928 673 ntBASIC14.2□□□□□ -0.14
AP4S1Q9Y587 AL773604.1-201ENST00000617417 272 ntBASIC14.2□□□□□ -0.14
AP4S1Q9Y587 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 AC114271.1-201ENST00000612689 2813 ntBASIC14.2□□□□□ -0.14
AP4S1Q9Y587 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms