Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 RNF146-211ENST00000609447 607 ntTSL 4 BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 AC073911.3-201ENST00000624401 631 ntBASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 AL161773.1-201ENST00000624845 863 ntBASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 CMC2-224ENST00000630396 481 ntTSL 5 BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 AC013268.4-201ENST00000637413 2228 ntBASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 AC105917.1-201ENST00000506637 2539 ntBASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 AC026410.1-201ENST00000507366 1101 ntBASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 NAT9-220ENST00000582870 896 ntTSL 5 BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC28.05■■■□□ 2.08
SHROOM4Q9ULL8 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 MBP-202ENST00000355994 2772 ntTSL 5 BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM4Q9ULL8 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 ORAOV1P1-201ENST00000503108 395 ntBASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 C2orf69P1-201ENST00000563532 1093 ntBASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 FRMPD2B-201ENST00000431305 1347 ntBASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 AMT-239ENST00000636865 1914 ntTSL 5 BASIC28.03■■■□□ 2.08
SHROOM4Q9ULL8 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 AC005962.1-201ENST00000584100 773 ntBASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC28.02■■■□□ 2.08
SHROOM4Q9ULL8 AC006058.4-201ENST00000624016 1670 ntBASIC28.02■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms