Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 AC023141.5-201ENST00000458585 616 ntBASIC14.85□□□□□ -0.03
SSU72Q9NP77 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 AC011498.7-201ENST00000624986 2027 ntBASIC14.85□□□□□ -0.03
SSU72Q9NP77 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SSU72Q9NP77 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC14.85□□□□□ -0.03
SSU72Q9NP77 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 AC007969.1-201ENST00000433675 447 ntBASIC14.84□□□□□ -0.03
SSU72Q9NP77 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 SPDYE12P-201ENST00000618416 771 ntBASIC14.84□□□□□ -0.03
SSU72Q9NP77 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SSU72Q9NP77 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SSU72Q9NP77 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms