Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 MVK-214ENST00000629016 1591 ntTSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 CLK3P2-201ENST00000427566 1453 ntBASIC11.28□□□□□ -0.6
LINC00477Q96M19 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 MEP1AP4-201ENST00000423244 1087 ntBASIC11.28□□□□□ -0.6
LINC00477Q96M19 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 AL391069.4-201ENST00000609583 481 ntBASIC11.28□□□□□ -0.6
LINC00477Q96M19 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 AL603764.1-201ENST00000636452 321 ntBASIC11.28□□□□□ -0.6
LINC00477Q96M19 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC11.28□□□□□ -0.6
LINC00477Q96M19 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00477Q96M19 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00477Q96M19 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00477Q96M19 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00477Q96M19 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00477Q96M19 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC11.27□□□□□ -0.6
LINC00477Q96M19 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC11.27□□□□□ -0.6
LINC00477Q96M19 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00477Q96M19 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC11.27□□□□□ -0.6
LINC00477Q96M19 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00477Q96M19 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC11.27□□□□□ -0.6
LINC00477Q96M19 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00477Q96M19 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00477Q96M19 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00477Q96M19 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 AC027601.5-201ENST00000624065 2482 ntBASIC11.27□□□□□ -0.61
LINC00477Q96M19 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 MIR1233-2-201ENST00000408138 82 ntBASIC11.27□□□□□ -0.61
LINC00477Q96M19 MIR1233-1-201ENST00000408722 82 ntBASIC11.27□□□□□ -0.61
LINC00477Q96M19 HLA-K-203ENST00000430151 1046 ntBASIC11.27□□□□□ -0.61
LINC00477Q96M19 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC11.27□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms