Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 MIR6125-201ENST00000618986 96 ntBASIC16.12■□□□□ 0.17
LRCH3Q96II8 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.12■□□□□ 0.17
LRCH3Q96II8 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LRCH3Q96II8 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
LRCH3Q96II8 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LRCH3Q96II8 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LRCH3Q96II8 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC16.12■□□□□ 0.17
LRCH3Q96II8 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRCH3Q96II8 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRCH3Q96II8 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
LRCH3Q96II8 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRCH3Q96II8 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.12■□□□□ 0.17
LRCH3Q96II8 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC16.12■□□□□ 0.17
LRCH3Q96II8 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRCH3Q96II8 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRCH3Q96II8 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRCH3Q96II8 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRCH3Q96II8 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRCH3Q96II8 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LRCH3Q96II8 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 NHP2P1-201ENST00000335274 462 ntBASIC16.11■□□□□ 0.17
LRCH3Q96II8 AL645937.2-201ENST00000396808 931 ntBASIC16.11■□□□□ 0.17
LRCH3Q96II8 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 AC005962.1-201ENST00000584100 773 ntBASIC16.11■□□□□ 0.17
LRCH3Q96II8 AL158211.2-201ENST00000607282 395 ntBASIC16.11■□□□□ 0.17
LRCH3Q96II8 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 AC010491.1-201ENST00000563101 2797 ntBASIC16.11■□□□□ 0.17
LRCH3Q96II8 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 AC244394.1-201ENST00000435000 1665 ntBASIC16.11■□□□□ 0.17
LRCH3Q96II8 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC16.11■□□□□ 0.17
LRCH3Q96II8 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRCH3Q96II8 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
LRCH3Q96II8 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
LRCH3Q96II8 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC16.1■□□□□ 0.17
LRCH3Q96II8 AC012441.2-201ENST00000444843 739 ntBASIC16.1■□□□□ 0.17
LRCH3Q96II8 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
LRCH3Q96II8 DUTP3-201ENST00000450025 415 ntBASIC16.1■□□□□ 0.17
LRCH3Q96II8 CISD2-202ENST00000503643 808 ntTSL 2 BASIC16.1■□□□□ 0.17
LRCH3Q96II8 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
LRCH3Q96II8 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC16.1■□□□□ 0.17
LRCH3Q96II8 MT3-203ENST00000565838 421 ntTSL 3 BASIC16.1■□□□□ 0.17
LRCH3Q96II8 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
LRCH3Q96II8 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
LRCH3Q96II8 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRCH3Q96II8 KRT18P9-201ENST00000604826 1300 ntBASIC16.1■□□□□ 0.17
LRCH3Q96II8 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms