Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.08□□□□□ -0.15
DEPDC4Q8N2C3 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
DEPDC4Q8N2C3 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.15
DEPDC4Q8N2C3 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
DEPDC4Q8N2C3 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.08□□□□□ -0.15
DEPDC4Q8N2C3 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 DMBT1P1-203ENST00000636837 4628 ntBASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 AC105021.1-202ENST00000570572 669 ntBASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 RN7SL828P-201ENST00000607615 303 ntBASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
DEPDC4Q8N2C3 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 AL031595.1-201ENST00000623969 4709 ntBASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 MBLAC2-202ENST00000514906 1936 ntBASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 AP001267.2-201ENST00000532619 2086 ntBASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 PEG13-201ENST00000631594 5667 ntBASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 CICP17-201ENST00000418553 2377 ntBASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 AZGP1P1-201ENST00000411909 902 ntBASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 TSPY16P-201ENST00000449843 468 ntBASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms