Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 KHSRPP1-201ENST00000427983 1768 ntBASIC18.46■□□□□ 0.55
RC3H1Q5TC82 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC18.46■□□□□ 0.55
RC3H1Q5TC82 AQP7P5-201ENST00000428759 1049 ntBASIC18.46■□□□□ 0.55
RC3H1Q5TC82 AQP7P4-201ENST00000447083 1042 ntBASIC18.46■□□□□ 0.55
RC3H1Q5TC82 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 AQP7P2-201ENST00000453967 1041 ntBASIC18.46■□□□□ 0.55
RC3H1Q5TC82 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 AQP7P3-201ENST00000624547 1041 ntBASIC18.46■□□□□ 0.55
RC3H1Q5TC82 AC009145.4-201ENST00000625119 1294 ntBASIC18.46■□□□□ 0.55
RC3H1Q5TC82 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 AL451007.2-201ENST00000632004 563 ntBASIC18.46■□□□□ 0.55
RC3H1Q5TC82 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 LTB4R2-202ENST00000528054 3092 ntBASIC18.46■□□□□ 0.55
RC3H1Q5TC82 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RC3H1Q5TC82 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 AC026691.1-201ENST00000602502 2017 ntBASIC18.45■□□□□ 0.54
RC3H1Q5TC82 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RC3H1Q5TC82 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 TMBIM7P-203ENST00000641617 1718 ntBASIC18.44■□□□□ 0.54
RC3H1Q5TC82 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 NHP2-202ENST00000314397 599 ntTSL 2 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 STK16-203ENST00000409516 895 ntTSL 2 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 OR8T1P-201ENST00000421347 918 ntBASIC18.44■□□□□ 0.54
RC3H1Q5TC82 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 CD164-210ENST00000512821 964 ntTSL 2 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 DNM1P51-201ENST00000558149 522 ntBASIC18.44■□□□□ 0.54
RC3H1Q5TC82 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC18.44■□□□□ 0.54
RC3H1Q5TC82 AC011247.3-201ENST00000603297 438 ntBASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms