Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 BCAS2P2-201ENST00000425064 674 ntBASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 RHEB-207ENST00000496004 744 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 RN7SL665P-201ENST00000578793 300 ntBASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 AP000322.3-201ENST00000608665 388 ntBASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 TMBIM7P-202ENST00000641474 1516 ntBASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 AC105917.1-201ENST00000506637 2539 ntBASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC88AQ3V6T2 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC88AQ3V6T2 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC88AQ3V6T2 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.89■□□□□ 0.46
CCDC88AQ3V6T2 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
CCDC88AQ3V6T2 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 SURF4-203ENST00000371991 715 ntTSL 3 BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 AC108734.2-201ENST00000420887 1069 ntBASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 AC093909.3-201ENST00000504783 336 ntBASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 TRMT112P3-201ENST00000580149 358 ntBASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 AC009560.1-201ENST00000620208 434 ntBASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 AGAP7P-201ENST00000582299 2062 ntBASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 AGAP14-201ENST00000624701 2060 ntBASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CCDC88AQ3V6T2 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 ST13P19-201ENST00000442505 1124 ntBASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 AC106047.2-201ENST00000511723 743 ntBASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 AC131206.1-201ENST00000538078 1211 ntBASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 HERC2P11-201ENST00000562845 725 ntBASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 AC100756.2-201ENST00000569537 736 ntBASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 BX088702.1-201ENST00000610784 235 ntBASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 KHSRPP1-201ENST00000427983 1768 ntBASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms