Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 REXO1L2P-201ENST00000425429 2069 ntBASIC12.15□□□□□ -0.46
CX3CL1P78423 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
CX3CL1P78423 AC079781.5-202ENST00000641784 3743 ntBASIC12.15□□□□□ -0.46
CX3CL1P78423 HNRNPA1P48-201ENST00000562726 1377 ntBASIC12.15□□□□□ -0.46
CX3CL1P78423 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
CX3CL1P78423 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.47
CX3CL1P78423 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.47
CX3CL1P78423 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC12.15□□□□□ -0.47
CX3CL1P78423 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC12.15□□□□□ -0.47
CX3CL1P78423 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC12.14□□□□□ -0.47
CX3CL1P78423 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 AL359183.1-201ENST00000623796 2132 ntBASIC12.14□□□□□ -0.47
CX3CL1P78423 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
CX3CL1P78423 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 PCDHGB8P-201ENST00000502926 1973 ntBASIC12.14□□□□□ -0.47
CX3CL1P78423 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
CX3CL1P78423 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC12.14□□□□□ -0.47
CX3CL1P78423 SLC9A7P1-202ENST00000556476 2239 ntBASIC12.14□□□□□ -0.47
CX3CL1P78423 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC12.14□□□□□ -0.47
CX3CL1P78423 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
CX3CL1P78423 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
CX3CL1P78423 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC12.14□□□□□ -0.47
CX3CL1P78423 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC12.14□□□□□ -0.47
CX3CL1P78423 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 AL645937.2-201ENST00000396808 931 ntBASIC12.14□□□□□ -0.47
CX3CL1P78423 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC12.14□□□□□ -0.47
CX3CL1P78423 DGCR5-201ENST00000399539 862 ntBASIC12.14□□□□□ -0.47
CX3CL1P78423 NUS1P3-201ENST00000423502 862 ntBASIC12.14□□□□□ -0.47
CX3CL1P78423 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC12.14□□□□□ -0.47
CX3CL1P78423 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC12.14□□□□□ -0.47
CX3CL1P78423 AP001582.1-201ENST00000525856 295 ntBASIC12.14□□□□□ -0.47
CX3CL1P78423 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC12.14□□□□□ -0.47
CX3CL1P78423 ENPP7P5-201ENST00000541031 1031 ntBASIC12.14□□□□□ -0.47
CX3CL1P78423 COQ6-210ENST00000554920 649 ntTSL 3 BASIC12.14□□□□□ -0.47
CX3CL1P78423 SPDYE22P-201ENST00000582158 798 ntBASIC12.14□□□□□ -0.47
CX3CL1P78423 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC12.14□□□□□ -0.47
CX3CL1P78423 AC027307.3-201ENST00000594262 1100 ntBASIC12.14□□□□□ -0.47
CX3CL1P78423 WFDC1-204ENST00000613603 549 ntBASIC12.14□□□□□ -0.47
CX3CL1P78423 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
CX3CL1P78423 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC12.14□□□□□ -0.47
CX3CL1P78423 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC12.14□□□□□ -0.47
CX3CL1P78423 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
CX3CL1P78423 CTBP1-AS2-206ENST00000581398 5652 ntBASIC12.14□□□□□ -0.47
CX3CL1P78423 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
CX3CL1P78423 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC12.14□□□□□ -0.47
CX3CL1P78423 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC12.14□□□□□ -0.47
CX3CL1P78423 AL158070.2-201ENST00000623713 1621 ntBASIC12.14□□□□□ -0.47
CX3CL1P78423 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC12.14□□□□□ -0.47
CX3CL1P78423 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
CX3CL1P78423 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC12.14□□□□□ -0.47
CX3CL1P78423 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.14□□□□□ -0.47
CX3CL1P78423 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CX3CL1P78423 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CX3CL1P78423 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC12.13□□□□□ -0.47
CX3CL1P78423 AL360270.3-201ENST00000609118 1348 ntBASIC12.13□□□□□ -0.47
CX3CL1P78423 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CX3CL1P78423 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
CX3CL1P78423 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC12.13□□□□□ -0.47
CX3CL1P78423 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC12.13□□□□□ -0.47
CX3CL1P78423 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CX3CL1P78423 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CX3CL1P78423 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
CX3CL1P78423 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC12.13□□□□□ -0.47
CX3CL1P78423 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CX3CL1P78423 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms